Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   CCE_RS12425 Genome accession   NC_010546
Coordinates   2691154..2694408 (+) Length   1084 a.a.
NCBI ID   WP_009544686.1    Uniprot ID   B1WT50
Organism   Crocosphaera subtropica ATCC 51142     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2686154..2699408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCE_RS12405 (cce_2619) - 2686793..2688448 (-) 1656 WP_009544690.1 ABC transporter substrate-binding protein -
  CCE_RS12410 (cce_2621) - 2688923..2689270 (+) 348 WP_009544689.1 hypothetical protein -
  CCE_RS12415 (cce_2622) - 2689273..2690037 (+) 765 WP_009544688.1 tetratricopeptide repeat protein -
  CCE_RS12420 (cce_2623) era 2690114..2691058 (+) 945 WP_009544687.1 GTPase Era -
  CCE_RS12425 (cce_2624) pilL-C 2691154..2694408 (+) 3255 WP_009544686.1 hybrid sensor histidine kinase/response regulator Machinery gene
  CCE_RS12430 (cce_2625) psbU 2694623..2694991 (+) 369 WP_009544685.1 photosystem II complex extrinsic protein PsbU -
  CCE_RS12435 (cce_2626) - 2695172..2695957 (-) 786 WP_009544684.1 hypothetical protein -
  CCE_RS12440 (cce_2627) - 2696063..2697328 (-) 1266 WP_009544683.1 dihydroorotase -
  CCE_RS12445 (cce_2628) - 2697535..2698167 (+) 633 WP_009544682.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 1084 a.a.        Molecular weight: 120307.42 Da        Isoelectric Point: 4.3884

>NTDB_id=30468 CCE_RS12425 WP_009544686.1 2691154..2694408(+) (pilL-C) [Crocosphaera subtropica ATCC 51142]
MNSRYSNPDQFSEELFDKDIAQLFEDLGQDSDCLEPDGELDELANLFEQDLSATSALEESDPSMDSSLLSSLPSDEEISD
LFYDDITWENNHDHKNQTSEEWHRDHPTDNREDGFFNDLTSAFEEFVQDDEMGELQKLLGTAESHQEIPSPLLSLYPPLE
TLASLLAQPATLSTDEVLDEATIAELAALIAAPAKAKQTPPTPALSPTQSTLASGSQGSDLDLEDDFRDLEALLEQADRT
MGGSPTIAPSPGKRFSGGTSTRVTKTKAFEQTMRVPIKQLDNLSNLIGELVVKRNSLEQDQERLRQFLDNLLNQVHNLSD
VGGRMQDLYERTLLEGALLASRNQSRTEPSDPFSTNNENHPVSNLPGNGEDRDLDALEMDRFTGFHLLSQEMIELIVRVR
ESASDIQFLVDETEQVSRNLRQVTTQLQEGMTKSRMVPFANTADRLPRAIREISRKLQKQAKLQVEGRDVLIDKMILEQL
YDPMTHLVNNAITHGIEEPALRQKQGKPNEGRIQLRAFLQGNQTVITVADDGGGIDAERVKRKAIEKGLISPEEANILSE
TEIYDFLFHPGFSTRDEADDFAGRGVGLDVVRTSLRDIRGSVTIDSLRGKGTTFTIRLPLTLSISKALCCISDRARIAFP
MDGVEDMKDYLPRDIMEDDTGEQYVIWNGQRLPVYPLNNLLSYNRQLGRNTVYGGQQEEETVSLVILRGAGTLLAVQVDQ
VMGEQEIVIKQIEGPIPKPAGIAGATVLGDGAIMPIGDVLELIAIAQGRLRTDTGSSIWQKQELGFETWTGERAEPTVLI
VDDSITVRELLSLSFSKSGYRVEQARDGQEAWEKLRSGLPCDLVFCDIEMPRMNGLEFLSNVQKEADLSRLPVALLTSRG
ADRHRKVAAKLGATAYFTKPCPDQTLIEAAQRMLAGEILLSGSTKKPIPKPSSANDSEGKSTHEQASFSDNHTVLIIDDS
VMVREMLSMSFSKAGYEIEQARDGQEAWEKLRGGLCCNLILCDIEMPRMTGLELLSRLQEDKKLSQIPIAMITSRGAQKM
QRIAAERGAKGYFVKPYIEEVLLDAAKRLIAGEILLEVNSLVEQ

Nucleotide


Download         Length: 3255 bp        

>NTDB_id=30468 CCE_RS12425 WP_009544686.1 2691154..2694408(+) (pilL-C) [Crocosphaera subtropica ATCC 51142]
ATGAACAGTCGTTATTCTAACCCAGATCAATTTAGCGAAGAATTATTTGATAAAGATATTGCCCAACTTTTTGAAGACTT
GGGCCAAGATTCAGATTGTTTAGAACCTGATGGGGAATTAGACGAATTAGCTAATTTATTTGAACAGGACTTATCAGCTA
CATCTGCTCTAGAAGAGTCTGACCCTTCGATGGATAGTTCTCTGTTGTCTTCTTTACCATCGGATGAAGAAATTAGCGAT
TTATTTTATGATGACATCACTTGGGAAAACAATCATGATCACAAAAATCAGACCTCAGAAGAATGGCACAGAGATCACCC
CACAGACAACAGAGAAGACGGCTTTTTTAACGATTTAACCTCCGCCTTTGAAGAATTTGTCCAAGATGATGAGATGGGAG
AACTTCAGAAACTGTTAGGCACAGCAGAGTCCCATCAGGAAATCCCTTCACCCCTTTTATCTCTGTATCCCCCCTTAGAA
ACCTTAGCTTCACTTCTGGCACAACCTGCCACTCTTTCCACTGACGAGGTTTTAGATGAGGCAACCATTGCCGAATTAGC
TGCCTTGATTGCGGCCCCGGCCAAAGCTAAACAGACACCTCCCACCCCTGCCTTATCCCCAACTCAATCCACCCTTGCTT
CAGGTTCCCAAGGCTCAGACTTGGATCTAGAAGATGATTTCAGGGATCTCGAAGCCCTCTTAGAACAAGCTGATCGTACC
ATGGGAGGGTCCCCCACCATAGCACCATCCCCAGGAAAACGGTTTTCTGGAGGCACTTCAACCCGTGTCACGAAAACAAA
AGCTTTTGAACAAACCATGCGGGTTCCCATTAAGCAACTGGATAATCTTAGTAATTTAATTGGGGAATTAGTGGTTAAAC
GCAATAGTTTAGAACAGGATCAAGAAAGACTCAGACAATTTTTAGATAACCTTCTCAACCAAGTCCATAACCTCAGCGAC
GTGGGGGGGCGCATGCAAGATTTATACGAACGAACCCTACTCGAAGGAGCTTTATTAGCCAGTCGGAATCAAAGTCGTAC
TGAACCGAGTGATCCCTTTAGCACGAACAATGAGAATCATCCCGTGTCTAACCTACCTGGCAATGGAGAAGATCGGGATT
TAGATGCCCTGGAAATGGATCGTTTTACTGGTTTCCATTTACTCTCCCAAGAAATGATTGAACTGATTGTCAGGGTACGG
GAATCGGCCTCTGATATTCAATTTTTAGTGGATGAAACCGAACAAGTCTCTCGCAACTTGCGACAAGTGACCACCCAACT
GCAAGAAGGGATGACCAAATCTCGGATGGTTCCCTTTGCCAATACCGCCGATCGCTTACCCCGTGCTATTCGGGAAATTT
CGAGAAAATTACAAAAACAAGCCAAGCTACAAGTAGAAGGGCGGGATGTTCTCATCGATAAGATGATCTTAGAACAACTC
TACGATCCCATGACCCACTTAGTGAATAACGCCATTACCCACGGTATCGAAGAACCGGCACTGAGACAAAAACAAGGCAA
ACCCAATGAAGGCCGAATCCAGTTACGCGCGTTTCTCCAAGGCAATCAAACCGTGATCACCGTTGCCGATGATGGGGGTG
GTATCGATGCCGAACGTGTGAAGCGTAAAGCCATCGAAAAAGGGCTTATTAGTCCTGAAGAAGCTAATATCCTCTCAGAA
ACCGAAATTTATGACTTCCTCTTTCATCCAGGATTTAGTACCCGTGACGAAGCCGATGATTTTGCCGGACGTGGGGTTGG
GTTAGATGTGGTTCGCACCAGTTTACGAGACATTCGCGGTTCTGTTACCATCGATTCTCTTCGTGGCAAAGGAACCACCT
TTACCATTCGCTTACCCCTAACCCTCAGCATTAGTAAAGCCCTCTGTTGTATTAGTGATCGCGCTCGCATTGCTTTTCCT
ATGGATGGAGTCGAAGATATGAAAGACTATCTCCCCAGAGATATAATGGAGGACGACACAGGGGAGCAATATGTAATCTG
GAATGGCCAACGTCTGCCCGTCTATCCTCTCAACAATCTCTTGTCCTATAACCGTCAACTGGGTCGCAATACCGTTTATG
GGGGTCAACAAGAAGAAGAGACAGTCTCTTTAGTCATCTTAAGGGGGGCTGGCACCTTACTGGCTGTGCAAGTCGATCAG
GTAATGGGAGAACAAGAAATTGTTATCAAACAAATTGAAGGACCTATTCCCAAACCGGCGGGAATTGCCGGGGCGACGGT
ACTGGGGGATGGGGCAATTATGCCGATTGGGGATGTTTTAGAATTGATCGCCATTGCCCAAGGACGCTTACGCACCGATA
CCGGTAGTAGTATCTGGCAAAAACAAGAATTAGGGTTTGAGACGTGGACAGGGGAACGGGCTGAACCGACGGTACTAATT
GTGGATGATTCGATTACAGTACGAGAATTGTTATCTTTGAGCTTTAGTAAGTCCGGGTATCGAGTCGAACAGGCCCGAGA
TGGTCAAGAAGCTTGGGAAAAACTGCGATCGGGCTTACCCTGTGATTTGGTGTTCTGTGACATTGAAATGCCCCGCATGA
ATGGCTTAGAGTTTCTATCCAATGTCCAAAAAGAAGCGGATCTTTCTCGATTACCTGTTGCTTTATTAACTTCCCGTGGT
GCCGATCGCCATCGTAAGGTAGCCGCTAAATTAGGAGCAACCGCTTACTTTACCAAACCTTGTCCCGATCAAACCCTCAT
AGAAGCTGCCCAACGGATGTTGGCCGGAGAAATTTTATTATCCGGTAGCACTAAAAAGCCTATACCAAAACCCTCATCAG
CTAATGATTCAGAAGGAAAGTCAACCCATGAGCAAGCTTCTTTTTCTGACAATCATACCGTGTTAATTATTGATGATTCG
GTTATGGTCAGGGAAATGCTTTCTATGAGCTTTAGCAAGGCAGGATATGAGATAGAACAGGCCCGAGATGGTCAAGAAGC
TTGGGAAAAATTACGGGGTGGTTTATGTTGCAATTTAATCCTCTGTGATATCGAAATGCCAAGAATGACGGGGTTAGAAT
TGTTATCCCGTTTGCAAGAAGATAAGAAACTATCCCAGATTCCGATTGCTATGATTACCTCCCGTGGAGCGCAGAAAATG
CAGCGTATTGCAGCCGAAAGAGGAGCAAAAGGCTATTTTGTCAAGCCTTACATTGAAGAGGTGTTATTAGATGCTGCTAA
ACGGTTAATTGCCGGGGAGATTTTACTGGAGGTTAACAGTCTCGTTGAGCAGTAA

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(628-764)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(271-433)

Response regulator receiver domain (Response_reg)

(798-910)

Response regulator receiver domain (Response_reg)

(954-1065)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(483-621)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1WT50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

64.652

90.037

0.582

Multiple sequence alignment