Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   DV119_RS08970 Genome accession   NZ_CP031245
Coordinates   1665232..1665936 (-) Length   234 a.a.
NCBI ID   WP_000722076.1    Uniprot ID   Q9S1K0
Organism   Streptococcus pneumoniae strain M16808     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660232..1670936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS08940 - 1660421..1661407 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  DV119_RS08945 - 1661670..1662443 (-) 774 WP_044811410.1 potassium channel family protein -
  DV119_RS08950 - 1662490..1662744 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE family toxin -
  DV119_RS08955 relB 1662746..1662988 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  DV119_RS08960 vicX 1663079..1663888 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DV119_RS08965 micB 1663890..1665239 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DV119_RS08970 micA 1665232..1665936 (-) 705 WP_000722076.1 response regulator YycF Regulator
  DV119_RS08975 mutY 1665991..1667166 (-) 1176 WP_000886125.1 A/G-specific adenine glycosylase -
  DV119_RS08985 - 1667495..1669165 (-) 1671 WP_000845292.1 formate--tetrahydrofolate ligase -
  DV119_RS08990 coaB 1669395..1670084 (+) 690 WP_000699498.1 phosphopantothenate--cysteine ligase -
  DV119_RS08995 coaC 1670096..1670647 (+) 552 WP_001284128.1 phosphopantothenoylcysteine decarboxylase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26815.63 Da        Isoelectric Point: 4.7164

>NTDB_id=304652 DV119_RS08970 WP_000722076.1 1665232..1665936(-) (micA) [Streptococcus pneumoniae strain M16808]
MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSA
KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLT
HREFELLYHLASHTGQVITREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA

Nucleotide


Download         Length: 705 bp        

>NTDB_id=304652 DV119_RS08970 WP_000722076.1 1665232..1665936(-) (micA) [Streptococcus pneumoniae strain M16808]
ATGAAAAAAATACTAATTGTAGATGATGAGAAACCAATCTCGGATATTATCAAGTTTAATATGACCAAGGAAGGTTACGA
AGTTGTAACTGCTTTTAATGGTCGTGAAGCGCTAGAGCAATTTGAAGCAGAGCAACCAGATATTATTATTCTGGATTTGA
TGCTTCCAGAAATTGATGGTTTAGAAGTTGCTAAGACCATTCGTAAGACAAGCAGTGTGCCCATTCTTATGCTTTCAGCC
AAAGATAGTGAATTTGATAAGGTTATCGGTTTGGAACTTGGGGCAGATGACTATGTAACGAAACCCTTCTCCAATCGTGA
GTTGCAGGCGCGTGTTAAAGCTCTTCTGCGTCGTTCTCAACCTATGCCAGTAGATGGTCAGGAAGCAGATAGTAAACCTC
AACCTATCCAAATTGGGGATTTAGAAATTGTTCCAGACGCCTACGTGGCTAAAAAATATGGCGAAGAACTAGACTTAACC
CATCGTGAATTTGAGCTTTTGTATCATTTAGCATCGCATACAGGTCAAGTCATCACGCGCGAACACTTGCTTGAGACTGT
CTGGGGTTATGACTATTTTGGTGATGTCCGCACAGTTGATGTGACTGTACGACGTCTGCGTGAGAAGATTGAAGATACGC
CCAGCCGACCAGAGTATATCTTGACGCGCCGTGGTGTAGGGTATTACATGAGAAATAATGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1NXS
  PDB 2A9O
  PDB 2A9P

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

100

100

1
  vicR Streptococcus mutans UA159

78.541

99.573

0.782
  covR Streptococcus salivarius strain HSISS4

44.156

98.718

0.436
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.478

98.291

0.427
  scnR Streptococcus mutans UA159

38.197

99.573

0.38

Multiple sequence alignment