Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DV119_RS08960 Genome accession   NZ_CP031245
Coordinates   1663079..1663888 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain M16808     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658079..1668888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS08940 - 1660421..1661407 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  DV119_RS08945 - 1661670..1662443 (-) 774 WP_044811410.1 potassium channel family protein -
  DV119_RS08950 - 1662490..1662744 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE family toxin -
  DV119_RS08955 relB 1662746..1662988 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  DV119_RS08960 vicX 1663079..1663888 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DV119_RS08965 micB 1663890..1665239 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DV119_RS08970 micA 1665232..1665936 (-) 705 WP_000722076.1 response regulator YycF Regulator
  DV119_RS08975 mutY 1665991..1667166 (-) 1176 WP_000886125.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=304650 DV119_RS08960 WP_001289493.1 1663079..1663888(-) (vicX) [Streptococcus pneumoniae strain M16808]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=304650 DV119_RS08960 WP_001289493.1 1663079..1663888(-) (vicX) [Streptococcus pneumoniae strain M16808]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment