Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   LCHO_RS24090 Genome accession   NC_010524
Coordinates   524537..524947 (-) Length   136 a.a.
NCBI ID   WP_012345522.1    Uniprot ID   B1XXZ1
Organism   Leptothrix cholodnii SP-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519537..529947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCHO_RS02425 (Lcho_0482) groES 520250..520540 (+) 291 WP_012345519.1 co-chaperone GroES -
  LCHO_RS02430 (Lcho_0483) groL 520586..522235 (+) 1650 WP_012345520.1 chaperonin GroEL -
  LCHO_RS21900 (Lcho_0484) - 522307..524430 (-) 2124 WP_012345521.1 FkbM family methyltransferase -
  LCHO_RS24090 (Lcho_0485) comP 524537..524947 (-) 411 WP_012345522.1 pilin Machinery gene
  LCHO_RS02450 (Lcho_0486) - 525113..526825 (-) 1713 WP_150105401.1 tetratricopeptide repeat protein -
  LCHO_RS02455 (Lcho_0487) - 526855..528759 (-) 1905 WP_083772659.1 tetratricopeptide repeat protein -
  LCHO_RS02465 (Lcho_0488) - 528779..529114 (-) 336 WP_012345525.1 hypothetical protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 13777.83 Da        Isoelectric Point: 7.7910

>NTDB_id=30450 LCHO_RS24090 WP_012345522.1 524537..524947(-) (comP) [Leptothrix cholodnii SP-6]
MKSIQRGFTLIELMIVVAIIGILAAVALPAYRDYTLRAKVSELLLAASSTRTAVTENSQNAGAINVSGITAPGAAGKVAS
ASVAATGIVIVGATAEFGGTAVTVTLVPSWNASANTVVWSCTVNPENLSPSSCRQD

Nucleotide


Download         Length: 411 bp        

>NTDB_id=30450 LCHO_RS24090 WP_012345522.1 524537..524947(-) (comP) [Leptothrix cholodnii SP-6]
ATGAAGAGCATCCAACGAGGTTTCACCCTCATCGAACTGATGATCGTCGTCGCGATCATCGGCATCCTGGCCGCAGTTGC
GCTGCCCGCTTACCGTGACTACACCTTGCGCGCCAAGGTTTCGGAGTTGCTGCTCGCAGCCAGCTCGACCCGTACTGCCG
TCACTGAAAATTCGCAGAACGCCGGTGCGATCAATGTCTCGGGCATCACGGCCCCGGGTGCCGCCGGCAAGGTCGCTTCA
GCTTCGGTGGCAGCCACGGGCATCGTCATCGTCGGCGCCACAGCCGAATTCGGTGGCACGGCCGTCACCGTGACGCTGGT
ACCGAGCTGGAACGCCTCGGCCAACACCGTTGTCTGGTCCTGCACGGTCAACCCGGAAAACCTCTCGCCGTCGTCCTGCC
GCCAAGACTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Pilin (bacterial filament) (Pilin)

(37-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1XXZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

45.578

100

0.493
  pilA2 Legionella pneumophila str. Paris

44.853

100

0.449
  pilA2 Legionella pneumophila strain ERS1305867

44.118

100

0.441
  pilE Neisseria gonorrhoeae MS11

42.857

97.794

0.419
  pilA Ralstonia pseudosolanacearum GMI1000

43.077

95.588

0.412
  pilA Acinetobacter baumannii strain A118

37.324

100

0.39

Multiple sequence alignment