Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DV384_RS04970 Genome accession   NZ_CP031241
Coordinates   1039744..1040250 (+) Length   168 a.a.
NCBI ID   WP_114934553.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1034744..1045250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS04965 uvrA 1036759..1039590 (-) 2832 WP_114934552.1 excinuclease ABC subunit UvrA -
  DV384_RS04970 ssb 1039744..1040250 (+) 507 WP_114934553.1 single-stranded DNA-binding protein Machinery gene
  DV384_RS04975 - 1040395..1041681 (+) 1287 WP_005631039.1 site-specific integrase -
  DV384_RS04980 - 1041668..1043188 (+) 1521 WP_014550508.1 site-specific integrase -
  DV384_RS04985 - 1043191..1045230 (+) 2040 WP_005631036.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18723.47 Da        Isoelectric Point: 5.2649

>NTDB_id=304490 DV384_RS04970 WP_114934553.1 1039744..1040250(+) (ssb) [Haemophilus influenzae strain M17648]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGAPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=304490 DV384_RS04970 WP_114934553.1 1039744..1040250(+) (ssb) [Haemophilus influenzae strain M17648]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGGCGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTGCGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

55.495

100

0.601
  ssb Neisseria meningitidis MC58

50.289

100

0.518
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518
  ssb Latilactobacillus sakei subsp. sakei 23K

34.831

100

0.369
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.057

100

0.363

Multiple sequence alignment