Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYN46_RS11330 Genome accession   NZ_CP031222
Coordinates   2512279..2512755 (-) Length   158 a.a.
NCBI ID   WP_114899488.1    Uniprot ID   -
Organism   Aquirhabdus parva strain HYN0046     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2507279..2517755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS11315 (HYN46_11315) - 2509124..2510011 (-) 888 WP_114899485.1 type II secretion system protein N -
  HYN46_RS11320 (HYN46_11320) gspN 2510008..2510793 (-) 786 WP_162818166.1 type II secretion system protein N -
  HYN46_RS11325 (HYN46_11325) hns 2511059..2511394 (-) 336 WP_114899487.1 H-NS family nucleoid-associated regulatory protein Regulator
  HYN46_RS11330 (HYN46_11330) ssb 2512279..2512755 (-) 477 WP_114899488.1 single-stranded DNA-binding protein Machinery gene
  HYN46_RS11335 (HYN46_11335) uvrA 2513234..2516068 (+) 2835 WP_114899489.1 excinuclease ABC subunit UvrA -
  HYN46_RS11340 (HYN46_11340) - 2516220..2516939 (+) 720 WP_228254801.1 MgtC/SapB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17513.16 Da        Isoelectric Point: 5.3193

>NTDB_id=304170 HYN46_RS11330 WP_114899488.1 2512279..2512755(-) (ssb) [Aquirhabdus parva strain HYN0046]
MRGVNKVILVGTLGRDPETKTFPSGGSVTQFSIATSESWKDKNTGEPREETEWHRIVLNNRLGEVAQQYLKKGSKVYIEG
SLRTRKWTDKEGVERYSTEVRGDSMQMLDSKGQSNSSGQNDYEPYAAAPQNNQAKSSSNNAPVQSSYSAGDLDDDLPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=304170 HYN46_RS11330 WP_114899488.1 2512279..2512755(-) (ssb) [Aquirhabdus parva strain HYN0046]
ATGCGCGGCGTTAATAAGGTTATTTTAGTCGGTACACTCGGTCGAGATCCGGAAACCAAAACATTTCCAAGTGGCGGTTC
AGTTACGCAATTTTCGATTGCGACCAGTGAAAGCTGGAAAGATAAAAATACAGGTGAACCACGTGAAGAAACGGAGTGGC
ACCGTATCGTTTTGAATAATCGTTTGGGTGAAGTGGCTCAGCAATACCTCAAAAAAGGTAGTAAGGTTTATATTGAAGGT
AGCTTACGGACTCGTAAATGGACAGATAAAGAAGGTGTAGAGCGTTATTCAACAGAAGTGCGTGGTGACTCTATGCAAAT
GCTCGATAGTAAGGGGCAGAGCAATTCCAGTGGTCAGAATGATTACGAGCCTTATGCAGCAGCACCGCAAAATAATCAAG
CTAAATCTTCTTCAAATAATGCACCTGTGCAAAGTAGCTACTCTGCAGGTGATTTAGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.701

100

0.525
  ssb Glaesserella parasuis strain SC1401

52.258

98.101

0.513
  ssb Neisseria meningitidis MC58

40.462

100

0.443
  ssb Neisseria gonorrhoeae MS11

40.462

100

0.443
  ssbA Bacillus subtilis subsp. subtilis str. 168

32.955

100

0.367

Multiple sequence alignment