Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HYN46_RS11325 Genome accession   NZ_CP031222
Coordinates   2511059..2511394 (-) Length   111 a.a.
NCBI ID   WP_114899487.1    Uniprot ID   A0A345P7X0
Organism   Aquirhabdus parva strain HYN0046     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2506059..2516394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS11310 (HYN46_11310) gspD 2506785..2509046 (-) 2262 WP_114899484.1 type II secretion system secretin GspD -
  HYN46_RS11315 (HYN46_11315) - 2509124..2510011 (-) 888 WP_114899485.1 type II secretion system protein N -
  HYN46_RS11320 (HYN46_11320) gspN 2510008..2510793 (-) 786 WP_162818166.1 type II secretion system protein N -
  HYN46_RS11325 (HYN46_11325) hns 2511059..2511394 (-) 336 WP_114899487.1 H-NS family nucleoid-associated regulatory protein Regulator
  HYN46_RS11330 (HYN46_11330) ssb 2512279..2512755 (-) 477 WP_114899488.1 single-stranded DNA-binding protein Machinery gene
  HYN46_RS11335 (HYN46_11335) uvrA 2513234..2516068 (+) 2835 WP_114899489.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12262.00 Da        Isoelectric Point: 10.4617

>NTDB_id=304169 HYN46_RS11325 WP_114899487.1 2511059..2511394(-) (hns) [Aquirhabdus parva strain HYN0046]
MSTDLSQLSVAELERVINQAKSLVEVKQVDAIKNGYAQIEAIAASLNMTLDELVEAGRTRGSRRTSTVRKPVEARYRNPQ
NPAEAWTGRGKPPRWLAAKINAGAKKEDFLI

Nucleotide


Download         Length: 336 bp        

>NTDB_id=304169 HYN46_RS11325 WP_114899487.1 2511059..2511394(-) (hns) [Aquirhabdus parva strain HYN0046]
ATGAGTACTGATTTAAGTCAATTATCGGTTGCGGAACTTGAGCGAGTCATTAATCAGGCCAAAAGCTTGGTTGAAGTAAA
GCAAGTTGATGCCATTAAAAATGGTTATGCACAAATTGAAGCAATCGCAGCAAGTTTAAATATGACGCTGGATGAGTTGG
TTGAAGCGGGGCGTACCCGTGGATCGCGCCGTACGTCTACAGTGCGTAAGCCAGTAGAAGCACGTTATCGCAATCCACAA
AATCCTGCAGAAGCATGGACGGGTCGCGGTAAACCGCCACGCTGGCTTGCAGCGAAAATTAATGCGGGTGCCAAGAAAGA
AGACTTCTTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345P7X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

48.649

100

0.486

Multiple sequence alignment