Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XFASM12_RS02445 Genome accession   NC_010513
Coordinates   563210..564730 (+) Length   506 a.a.
NCBI ID   WP_004086548.1    Uniprot ID   A0AAW6HUC5
Organism   Xylella fastidiosa M12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 558210..569730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFASM12_RS02415 (Xfasm12_0515) rpsM 558925..559281 (+) 357 WP_004086542.1 30S ribosomal protein S13 -
  XFASM12_RS02420 (Xfasm12_0516) rpsK 559297..559689 (+) 393 WP_004086543.1 30S ribosomal protein S11 -
  XFASM12_RS02425 (Xfasm12_0517) rpsD 559704..560330 (+) 627 WP_004086544.1 30S ribosomal protein S4 -
  XFASM12_RS02430 (Xfasm12_0518) rpoA 560386..561384 (+) 999 WP_004086545.1 DNA-directed RNA polymerase subunit alpha -
  XFASM12_RS02435 (Xfasm12_0519) rplQ 561514..561894 (+) 381 WP_004086546.1 50S ribosomal protein L17 -
  XFASM12_RS02440 (Xfasm12_0520) - 562939..563199 (+) 261 WP_004086547.1 accessory factor UbiK family protein -
  XFASM12_RS02445 (Xfasm12_0521) comM 563210..564730 (+) 1521 WP_004086548.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  XFASM12_RS13010 - 567435..567671 (+) 237 WP_202979880.1 hypothetical protein -
  XFASM12_RS12125 - 567944..568992 (+) 1049 Protein_466 lipase secretion chaperone -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54510.60 Da        Isoelectric Point: 8.0750

>NTDB_id=30351 XFASM12_RS02445 WP_004086548.1 563210..564730(+) (comM) [Xylella fastidiosa M12]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASQAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLPAAQRFEVKADVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGVQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGRCQCGVDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDSRTLQYNRQAGLNAHLGQAATERHCCLDVTDQQLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTAFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=30351 XFASM12_RS02445 WP_004086548.1 563210..564730(+) (comM) [Xylella fastidiosa M12]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCCCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGCCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGCGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGCGGTCAATTGCCACTCGATGCTTTAGCAGGTAAGGAGTTCCT
AGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCACAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGCACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGCCGGCTGCTCAGAGATTCGAAGTTAAGGCCGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAAGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGTGGTAAAACTCTTTTAGCCTCAAGATTGCCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGTGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGTACAGGCACGTCCTGGTGAGATCTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGCAAAACCTTGGAAGCCTTACGTGAACCCATG
GAATCAGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTGGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGACGTTGTCAATGTGGTGTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCGTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCACCGCAGCTACTGCGTCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTCACTGATTCCAGGACTTTGCAATATAATCGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGTGACCGACCAGCAGTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGAGTAGCACGCACGATTGCTGATTTGGATGGT
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTTGACCGTACAGCCTTTGGCATTGCTTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.8

98.814

0.532
  comM Vibrio campbellii strain DS40M4

53.6

98.814

0.53
  comM Haemophilus influenzae Rd KW20

52.381

99.605

0.522
  comM Glaesserella parasuis strain SC1401

52.079

99.802

0.52
  comM Legionella pneumophila str. Paris

50

98.814

0.494
  comM Legionella pneumophila strain ERS1305867

50

98.814

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.301

100

0.441

Multiple sequence alignment