Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DT536_RS06515 Genome accession   NZ_CP031011
Coordinates   1355248..1357311 (+) Length   687 a.a.
NCBI ID   WP_058870416.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1350248..1362311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS06495 (DT536_06495) pilM 1352268..1353326 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  DT536_RS06500 (DT536_06500) comN 1353326..1353982 (+) 657 WP_058870419.1 PilN domain-containing protein Machinery gene
  DT536_RS06505 (DT536_06505) pilO 1353979..1354701 (+) 723 WP_058870418.1 type 4a pilus biogenesis protein PilO Machinery gene
  DT536_RS06510 (DT536_06510) pilP 1354701..1355228 (+) 528 WP_058870417.1 pilus assembly protein PilP Machinery gene
  DT536_RS06515 (DT536_06515) pilQ 1355248..1357311 (+) 2064 WP_058870416.1 type IV pilus secretin PilQ family protein Machinery gene
  DT536_RS06520 (DT536_06520) aroK 1357349..1357882 (+) 534 WP_004978075.1 shikimate kinase AroK -
  DT536_RS06525 (DT536_06525) aroB 1357913..1358998 (+) 1086 WP_058870415.1 3-dehydroquinate synthase -
  DT536_RS06530 (DT536_06530) - 1359006..1359845 (+) 840 WP_058870414.1 hypothetical protein -

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74740.74 Da        Isoelectric Point: 5.2232

>NTDB_id=302839 DT536_RS06515 WP_058870416.1 1355248..1357311(+) (pilQ) [Acinetobacter johnsonii strain LXL_C1]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLTDAGAFTTRVEGNTFILKINSANPMVATPVAAARSEQGIS
NIGFQRGSGGEGQIVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQNIKLAPIQTDYIQLSYAKVEDIEKLMTQSKGSNNS
NGVGNDNNDSLLSARGSVTSDKRTNTLILNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWSAQKLG
NSPVWGGDFQPSFDLGVDLATGTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQIPYQT
WSAETGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTVGALTSAGYLINTNELETNVLVDDGETVVLGGIFDDIKQN
QYEKVPFFGDLPVVGALFKNNTKSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=302839 DT536_RS06515 WP_058870416.1 1355248..1357311(+) (pilQ) [Acinetobacter johnsonii strain LXL_C1]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGTATTGCAGTGGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGACGGATGCAGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAATCCAATGGTAGCAACACCTGTTGCTGCGGCGCGTTCAGAGCAAGGCATTTCA
AATATTGGCTTCCAACGCGGTTCAGGCGGTGAAGGCCAAATTGTGATTGATTTAAAAGGCAGTAATACGCCTGTCGATGT
GAAACAGCAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCACACTTATCACGCCGTCTCAATGTGA
ATGATTTCGCAACGCCTGTATCGACCATCGATGCACAAAATGATGGTAGTAACGGCCTGATCACGATCCAATCGAATGGC
AGTTTTGAATACATGGCTTATCAGGCAGAAGATAAGCTTACGATTAGTTTAAAGCGCCCTGAAGATAAGAATCCAATGAA
ACCTAAAGCACCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTCCAAGATATTGAAGTGCGCCGTGTATTGCAGC
TTTTGGCTGATTTTACAGGTATTAATATGGTGGCTTCGGATACGGTACAAGGTAATATTACCCTACGCCTTAAAGATGTC
CCATGGGATCAAGCACTTGATATCATAATGAAAACCAAGAATTTAGATAAGCGCCGCAATGGTAATGTGATTTGGATTGC
CCCTGTAGCTGAACTGATCAAATCTGAAGAAGATGAAGCGAAGGCGATTGCACAAAATATTAAGCTTGCGCCAATCCAAA
CAGATTATATTCAATTGAGTTATGCAAAAGTAGAGGATATCGAAAAGTTAATGACCCAATCGAAAGGGTCGAATAATTCA
AATGGCGTTGGCAATGATAATAATGATTCATTGCTTAGTGCGAGAGGTTCGGTGACGTCTGATAAGCGTACTAATACGTT
AATTTTAAATGATACATCACAAAATATTGATAAGATCCGCCGGATGATTGACTTGCTGGATGTTGCAGTGAAACAGGTTA
TGGTCGAAGCCCGTATTGTCACGGCACAAACGGATTTCTCTCGTGAACTAGGCATCCGTTGGAGTGCTCAAAAATTGGGG
AATAGTCCAGTTTGGGGGGGGGATTTCCAGCCGAGTTTTGATTTGGGAGTAGATTTAGCAACAGGTACGGCTGGAACGTT
TAACTTTGGTTTATTGAAAATCTCAGATTATATGCTGAATCTTGAGTTAACTGCACTACAAGCAGATGGTCATGGTGAAG
TGTTATCTGCGCCGAAAGTACTCACGGGTGACAAGCAAAAAGCCTATATTTTACGTGGAGATCAAATTCCTTACCAAACT
TGGAGTGCCGAGACAGGGACAACAACCAGTTTTGTTGATGCGAATTTAAAGTTAGAAGTGACTCCAAGTATTACGCCTGA
TGGCCGTGTACAAATGTCGTTGAAAATTGAAAAAGATACTGTTGGCGCACTAACATCTGCAGGGTATTTGATTAATACCA
ATGAACTTGAAACCAATGTTTTGGTGGATGATGGCGAGACGGTTGTATTGGGTGGTATTTTTGATGACATTAAGCAAAAT
CAATATGAGAAAGTTCCCTTTTTTGGGGATTTGCCTGTAGTGGGTGCTTTATTTAAAAATAACACCAAATCTAGTGCGCA
AACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-452)

Bacterial type II and III secretion system protein (Secretin)

(525-679)

AMIN domain (AMIN)

(55-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.475

100

0.693
  pilQ Acinetobacter baumannii strain A118

65.337

100

0.691
  comQ Acinetobacter baylyi ADP1

62.535

100

0.646
  pilQ Pseudomonas aeruginosa PAK

39.884

100

0.399
  pilQ Legionella pneumophila strain Lp02

37.719

99.563

0.376
  pilQ Legionella pneumophila strain ERS1305867

37.758

98.69

0.373

Multiple sequence alignment