Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   DT536_RS03850 Genome accession   NZ_CP031011
Coordinates   805539..806693 (+) Length   384 a.a.
NCBI ID   WP_058868689.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 800539..811693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS03835 (DT536_03835) - 802239..804284 (-) 2046 WP_058868691.1 TonB-dependent copper receptor -
  DT536_RS03840 (DT536_03840) - 804357..804794 (-) 438 WP_058868690.1 DUF2946 family protein -
  DT536_RS03845 (DT536_03845) def 804885..805418 (-) 534 WP_004684452.1 peptide deformylase -
  DT536_RS03850 (DT536_03850) tsaP 805539..806693 (+) 1155 WP_058868689.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DT536_RS03855 (DT536_03855) dprA 806716..807849 (+) 1134 WP_058868688.1 DNA-processing protein DprA Machinery gene
  DT536_RS03860 (DT536_03860) - 807895..808464 (+) 570 WP_010325660.1 L-threonylcarbamoyladenylate synthase -
  DT536_RS03865 (DT536_03865) - 808864..809784 (-) 921 WP_058868687.1 DMT family transporter -
  DT536_RS03870 (DT536_03870) - 810122..810676 (+) 555 WP_058868686.1 hypothetical protein -
  DT536_RS03875 (DT536_03875) - 810800..811345 (+) 546 WP_058868685.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42214.14 Da        Isoelectric Point: 8.2197

>NTDB_id=302829 DT536_RS03850 WP_058868689.1 805539..806693(+) (tsaP) [Acinetobacter johnsonii strain LXL_C1]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVTSTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGTGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDK

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=302829 DT536_RS03850 WP_058868689.1 805539..806693(+) (tsaP) [Acinetobacter johnsonii strain LXL_C1]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCTGGCGTCACTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCTCCTGCTTTAAAAGCCAATG
CACCAAATGTTTACGTGGTGAAAAAAGGCGATACCCTTTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGTTTATTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGCGCTGCCGATCAGCGTGTCATTGCAGG
TACAGGGCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGATGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCAAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGTAATATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTAGTGGATAAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.714

100

0.659

Multiple sequence alignment