Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DT536_RS03685 Genome accession   NZ_CP031011
Coordinates   766274..767761 (+) Length   495 a.a.
NCBI ID   WP_062033311.1    Uniprot ID   A0AAW6J338
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 761274..772761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS03660 (DT536_03660) ribD 762184..763287 (-) 1104 WP_058868721.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  DT536_RS03665 (DT536_03665) nrdR 763302..763760 (-) 459 WP_004692852.1 transcriptional regulator NrdR -
  DT536_RS03670 (DT536_03670) - 763912..765306 (-) 1395 WP_058868720.1 ammonium transporter -
  DT536_RS03675 (DT536_03675) glnK 765366..765704 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  DT536_RS03680 (DT536_03680) - 765981..766208 (+) 228 WP_058868719.1 accessory factor UbiK family protein -
  DT536_RS03685 (DT536_03685) comM 766274..767761 (+) 1488 WP_062033311.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DT536_RS03690 (DT536_03690) - 767833..768603 (-) 771 WP_058868716.1 TorF family putative porin -
  DT536_RS03695 (DT536_03695) - 768950..769720 (-) 771 WP_058868714.1 TorF family putative porin -
  DT536_RS03700 (DT536_03700) - 770180..771505 (+) 1326 WP_010325681.1 OprD family outer membrane porin -
  DT536_RS03705 (DT536_03705) ppa 771608..772135 (-) 528 WP_058868713.1 inorganic diphosphatase -
  DT536_RS03710 (DT536_03710) - 772254..772658 (-) 405 WP_005401007.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54374.25 Da        Isoelectric Point: 8.0050

>NTDB_id=302828 DT536_RS03685 WP_062033311.1 766274..767761(+) (comM) [Acinetobacter johnsonii strain LXL_C1]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQVVE
DSATVRERVIQAYQWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEHIQ
TGHLTEALSYRQQNA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=302828 DT536_RS03685 WP_062033311.1 766274..767761(+) (comM) [Acinetobacter johnsonii strain LXL_C1]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATTAACCTTGCACCTGCAGATCTGCCCAAAGACAGCTCGCGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGGGC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCGAGACGTGCCTTAGAGATTGCGGCAGCAGGCGGTCATTCTT
TGCTATTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTCCCACCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTAATTGCCGCAATGAATCCGTGTCCCTG
TGGTTATGCGTTTAATCAAGATAGCCGTTGTCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGTATTTCCGGGC
CTTTGCTGGATCGAATTGATTTACATATTGATGTACCACCCTTGCATGCGTCTGAATTACAAGACACACAAGTCGTAGAA
GACTCGGCAACTGTACGTGAGCGCGTGATTCAAGCTTATCAATGGCAAATGCAGCGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAACAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCACCGGATTTTAAGAGTGGCCAGAACCATTGCGGATTTGGCCCAGTCAGAGCACATTCAA
ACGGGACATTTGACTGAAGCTCTCTCCTACCGACAGCAAAATGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.503

100

0.519
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Vibrio cholerae strain A1552

50.6

100

0.511
  comM Vibrio campbellii strain DS40M4

50.803

100

0.511
  comM Legionella pneumophila str. Paris

50.602

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.467

Multiple sequence alignment