Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   DT536_RS03855 Genome accession   NZ_CP031011
Coordinates   806716..807849 (+) Length   377 a.a.
NCBI ID   WP_058868688.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 801716..812849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS03835 (DT536_03835) - 802239..804284 (-) 2046 WP_058868691.1 TonB-dependent copper receptor -
  DT536_RS03840 (DT536_03840) - 804357..804794 (-) 438 WP_058868690.1 DUF2946 family protein -
  DT536_RS03845 (DT536_03845) def 804885..805418 (-) 534 WP_004684452.1 peptide deformylase -
  DT536_RS03850 (DT536_03850) tsaP 805539..806693 (+) 1155 WP_058868689.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DT536_RS03855 (DT536_03855) dprA 806716..807849 (+) 1134 WP_058868688.1 DNA-processing protein DprA Machinery gene
  DT536_RS03860 (DT536_03860) - 807895..808464 (+) 570 WP_010325660.1 L-threonylcarbamoyladenylate synthase -
  DT536_RS03865 (DT536_03865) - 808864..809784 (-) 921 WP_058868687.1 DMT family transporter -
  DT536_RS03870 (DT536_03870) - 810122..810676 (+) 555 WP_058868686.1 hypothetical protein -
  DT536_RS03875 (DT536_03875) - 810800..811345 (+) 546 WP_058868685.1 glutathione peroxidase -
  DT536_RS03880 (DT536_03880) - 811544..811918 (+) 375 WP_058868684.1 RcnB family protein -
  DT536_RS03885 (DT536_03885) - 812051..812641 (+) 591 WP_058868683.1 hypothetical protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41761.37 Da        Isoelectric Point: 6.6816

>NTDB_id=302830 DT536_RS03855 WP_058868688.1 806716..807849(+) (dprA) [Acinetobacter johnsonii strain LXL_C1]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVTEIQTPAGQIKLQTLLHDV
QANCDFILLDTESHYPSQLLPYSDRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLDLTYPFQHQTLRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAKSAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
NLLELYNQLDWVGQNMDQLNFKLNTDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=302830 DT536_RS03855 WP_058868688.1 806716..807849(+) (dprA) [Acinetobacter johnsonii strain LXL_C1]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCGAGCTTTCA
AAAGCTACAGCAGCATTTTGGCACAAGCACAAAAGCTGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTTGGCTTAC
ACAAAAGCCATCTACAACGTGTCACAGAAATCCAAACACCTGCTGGCCAAATCAAATTACAAACTTTACTGCATGACGTC
CAAGCCAATTGTGATTTTATTTTGCTTGATACTGAAAGTCATTATCCCTCGCAGTTGCTGCCCTATTCTGACCGGCCACC
GATTTTATTTGGTCAGGGCAATCCACAAAGTTTACTCCAACCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCAC
ACGGCAAACAAGTGGCTTATGACTTTGCCTATTACCTCGCCGAAAAGGGCTTTTATATTTGCAGTGGTTTGGCTGAAGGC
ATTGATGCAGCGGCACATCAGGGCGGCTTAAAATATCAACGTACCATTGCAGTGATGGGCACGGGCTTAGATCTCACTTA
TCCTTTCCAACATCAAACACTGCGTACGCAAATATTAGAAAATAATGGCTGTATCATTACTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGGCGAAACCGCATCGTCAGTGCATTGAGTTTAGGGGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTTGGCACAGCCAAATCTGCTGCTGAACAAGGGAAAACCATTTTTGCGATTCCCGGTCATATTTA
CAGTGAACACCATCAAGGCTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGCGCTAGTATTGAGATCCCATCT
AATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACACCGATAT
TGCCACACTCACCAGCCAGTTAATGGAACTGGAAATTTTGGGGCTTGCACAACAACAAGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663

  dprA Acinetobacter baumannii D1279779

65.426

99.735

0.653

  dprA Acinetobacter baylyi ADP1

60.367

100

0.61


Multiple sequence alignment