Detailed information NTG0302449

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DTA40_RS08815
• Genome accession: NZ_CP030928
• Coordinates: 1702887..1703315 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CS18
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1697887..1708315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DTA40_RS08775 (DTA40_09015)	-	1698023..1698466 (-)	444	WP_011681680.1	hypothetical protein	-
DTA40_RS10145 (DTA40_09020)	-	1698540..1698878 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
DTA40_RS10150 (DTA40_09025)	-	1698922..1699197 (-)	276	WP_011681681.1	hypothetical protein	-
DTA40_RS08785 (DTA40_09030)	-	1699209..1699407 (-)	199	Protein_1683	helix-turn-helix transcriptional regulator	-
DTA40_RS08790 (DTA40_09035)	-	1699656..1700849 (-)	1194	WP_014608740.1	acetate kinase	-
DTA40_RS08795 (DTA40_09040)	comYH	1700905..1701861 (-)	957	WP_011681684.1	class I SAM-dependent methyltransferase	Machinery gene
DTA40_RS08800 (DTA40_09045)	comGG	1701906..1702223 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
DTA40_RS08805 (DTA40_09050)	comYF	1702201..1702638 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
DTA40_RS08810 (DTA40_09055)	comGE	1702622..1702915 (-)	294	WP_024704238.1	competence type IV pilus minor pilin ComGE	-
DTA40_RS08815 (DTA40_09060)	comYD	1702887..1703315 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
DTA40_RS08820 (DTA40_09065)	comYC	1703275..1703601 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
DTA40_RS08825 (DTA40_09070)	comYB	1703598..1704698 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
DTA40_RS08830 (DTA40_09075)	comGA/cglA/cilD	1704580..1705521 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
DTA40_RS08835 (DTA40_09080)	-	1705602..1705964 (-)	363	WP_014622006.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=302449 DTA40_RS08815 WP_011226626.1 1702887..1703315(-) (comYD) [Streptococcus thermophilus strain CS18]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=302449 DTA40_RS08815 WP_011226626.1 1702887..1703315(-) (comYD) [Streptococcus thermophilus strain CS18]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCGAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38