Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ETT56_RS08865 Genome accession   NZ_CP035443
Coordinates   1726391..1727065 (-) Length   224 a.a.
NCBI ID   WP_023610693.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm58     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721391..1732065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT56_RS08850 (ETT56_08840) - 1723029..1724417 (-) 1389 WP_063632880.1 HAMP domain-containing sensor histidine kinase -
  ETT56_RS08855 (ETT56_08845) - 1724414..1725067 (-) 654 WP_002991237.1 response regulator transcription factor -
  ETT56_RS08860 (ETT56_08850) - 1725161..1726378 (-) 1218 WP_002993552.1 ABC transporter permease -
  ETT56_RS08865 (ETT56_08855) amiE 1726391..1727065 (-) 675 WP_023610693.1 ABC transporter ATP-binding protein Regulator
  ETT56_RS08870 (ETT56_08860) - 1727052..1728320 (-) 1269 WP_023610761.1 efflux RND transporter periplasmic adaptor subunit -
  ETT56_RS08875 (ETT56_08865) - 1728744..1729028 (-) 285 WP_002982442.1 hypothetical protein -
  ETT56_RS08880 (ETT56_08870) - 1729175..1729471 (-) 297 WP_002982439.1 DUF4298 domain-containing protein -
  ETT56_RS08885 (ETT56_08875) - 1729604..1731547 (-) 1944 WP_023610713.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24812.64 Da        Isoelectric Point: 5.7945

>NTDB_id=302452 ETT56_RS08865 WP_023610693.1 1726391..1727065(-) (amiE) [Streptococcus pyogenes strain emm58]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNDLADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=302452 ETT56_RS08865 WP_023610693.1 1726391..1727065(-) (amiE) [Streptococcus pyogenes strain emm58]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGGACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCTATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGATCTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAATTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTGCC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGGGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.874

100

0.371
  amiE Streptococcus thermophilus LMG 18311

34.034

100

0.362
  amiE Streptococcus thermophilus LMD-9

34.034

100

0.362

Multiple sequence alignment