Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DR994_RS07670 Genome accession   NZ_CP030927
Coordinates   1487603..1488637 (-) Length   344 a.a.
NCBI ID   WP_173940629.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS9     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1482603..1493637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS07645 (DR994_07830) ilvD 1482867..1484570 (-) 1704 WP_002951651.1 dihydroxy-acid dehydratase -
  DR994_RS07650 (DR994_07835) - 1484698..1485879 (+) 1182 WP_173940628.1 NAD(P)/FAD-dependent oxidoreductase -
  DR994_RS07660 (DR994_07845) trmB 1486099..1486740 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DR994_RS07665 (DR994_07850) - 1486750..1487541 (-) 792 WP_002951667.1 phosphotransferase family protein -
  DR994_RS07670 (DR994_07855) pptB 1487603..1488637 (-) 1035 WP_173940629.1 ABC transporter permease Regulator
  DR994_RS07675 (DR994_07860) pptA 1488634..1489365 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  DR994_RS07680 (DR994_07865) - 1489430..1489849 (+) 420 WP_002891660.1 HIT family protein -
  DR994_RS07685 (DR994_07870) - 1489846..1490145 (+) 300 WP_173940630.1 hypothetical protein -
  DR994_RS10095 - 1490707..1490928 (-) 222 WP_002947520.1 hypothetical protein -
  DR994_RS07695 (DR994_07880) - 1490947..1491582 (-) 636 WP_022096674.1 DUF4230 domain-containing protein -
  DR994_RS10270 - 1491601..1491726 (-) 126 WP_011681534.1 hypothetical protein -
  DR994_RS07700 (DR994_07885) - 1491938..1493103 (-) 1166 Protein_1488 IS256-like element IS1191 family transposase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40050.66 Da        Isoelectric Point: 10.5705

>NTDB_id=302378 DR994_RS07670 WP_173940629.1 1487603..1488637(-) (pptB) [Streptococcus thermophilus strain CS9]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKCTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVNNLKRLINQIVLVMTLIQALCLFDLKF
SLILVGVMLVLSLVYLPAKLKKMI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=302378 DR994_RS07670 WP_173940629.1 1487603..1488637(-) (pptB) [Streptococcus thermophilus strain CS9]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAG
ATTTTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTTTGGCCTTGGGTCTTCCAGTTTGGAGAG
TTGTCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGGTTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAT
GTACGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTATCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
ACAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.668

99.709

0.974

  pptB Streptococcus salivarius strain HSISS4

92.42

99.709

0.922


Multiple sequence alignment