Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DRB87_RS02400 Genome accession   NZ_CP030849
Coordinates   536525..538063 (-) Length   512 a.a.
NCBI ID   WP_130024733.1    Uniprot ID   -
Organism   Pandoraea sp. XY-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 531525..543063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRB87_RS02380 (DRB87_02390) - 533026..534390 (+) 1365 WP_370363386.1 sigma-54-dependent transcriptional regulator -
  DRB87_RS02385 (DRB87_02395) - 534411..534905 (-) 495 WP_370363388.1 TlpA disulfide reductase family protein -
  DRB87_RS02390 (DRB87_02400) - 535117..535713 (-) 597 WP_240756150.1 thioredoxin -
  DRB87_RS02395 (DRB87_02405) - 535963..536502 (+) 540 WP_130024732.1 hypothetical protein -
  DRB87_RS02400 (DRB87_02410) comM 536525..538063 (-) 1539 WP_130024733.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DRB87_RS02405 (DRB87_02415) - 538361..538609 (-) 249 WP_017235617.1 accessory factor UbiK family protein -
  DRB87_RS02410 (DRB87_02420) - 539003..539824 (+) 822 WP_130024734.1 TorF family putative porin -
  DRB87_RS02415 (DRB87_02425) - 539838..540176 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  DRB87_RS02420 (DRB87_02430) amt 540263..541731 (+) 1469 Protein_490 ammonium transporter -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53813.45 Da        Isoelectric Point: 7.7780

>NTDB_id=301871 DRB87_RS02400 WP_130024733.1 536525..538063(-) (comM) [Pandoraea sp. XY-2]
MSLAVVSSRAITGMAARAVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNCRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPDAGLRSHEFAGELSLTGELRPVRGALAMASAMLAEPSARALVLPAGSAQEAALVEGATVYGAR
TLLDVCAHLAEPDVATPLPRAVVPLALAASADSGVAQASDLPDLGDIKGQEHAKRALEVAAAGGHHILFYGPPGTGKSML
ATRLAGLLPALSKAQAVEAATLASLSVQGFDMRHWGRRPFRAPHHTASAAALVGGGSAPRPGEISLAHRGVLFLDELPEF
QRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRNCRCTSEAVARYRNRLSGPLLDRIDLHVE
VPALSAEMFAAPASGERSEVVATRVSQARERQLSRQGQLNSGLSSRALEAQCALRPNAQDVLHRAVTQHHWSARTYHRVL
RVARTVADLAGIGDIDADHVAEAVQYREAPSS

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=301871 DRB87_RS02400 WP_130024733.1 536525..538063(-) (comM) [Pandoraea sp. XY-2]
ATGTCATTGGCAGTTGTCAGCAGCCGTGCGATCACGGGGATGGCGGCCCGCGCGGTCACCGTCGAAGTGCACTTGGCGAA
CGGGCTGCCCGGCCTGTCGCTGGTCGGCCTGCCCGATACCGAGGTCAAGGAAAGCCGGGAGCGCGTGCGCTCGGCGTTGC
AGAACTGCCGGTTCGAATTCCCCGCCCGGCGCATCACGGTCAATCTGGCGCCGGCCGATTTACCCAAAGCGTCTGGCTGC
TTCGATCTGCCGATTGCGCTTGGCATCCTTGCGGCCAGCGGTCAGCTCCCCGACGCCGGATTGCGCTCGCACGAGTTTGC
GGGAGAGTTATCGCTCACCGGCGAGTTGCGTCCGGTTCGCGGGGCATTGGCGATGGCGAGCGCCATGCTGGCCGAGCCGT
CGGCGCGTGCGCTCGTGCTACCTGCGGGAAGCGCGCAGGAAGCCGCATTGGTGGAGGGCGCCACTGTCTATGGCGCGCGC
ACCTTGCTCGATGTCTGCGCACATCTCGCCGAGCCCGACGTGGCGACGCCGCTGCCGCGCGCCGTTGTCCCACTGGCGCT
GGCGGCGTCGGCCGACAGCGGCGTCGCGCAAGCAAGCGACCTCCCCGACCTGGGCGATATCAAGGGACAAGAGCACGCCA
AGCGCGCGCTGGAAGTTGCGGCGGCGGGCGGACATCACATCCTGTTCTACGGTCCACCGGGTACCGGCAAGTCGATGCTC
GCGACGCGGCTCGCGGGACTGCTCCCGGCGCTGAGCAAGGCACAGGCCGTGGAAGCCGCCACGCTGGCCAGCCTGAGCGT
ACAGGGATTCGATATGCGCCACTGGGGCCGGCGACCGTTTCGCGCGCCGCATCACACGGCGTCGGCCGCGGCCCTGGTGG
GCGGAGGTAGCGCGCCGCGGCCCGGTGAAATCAGCCTGGCCCATCGCGGGGTGCTCTTTCTCGACGAACTACCTGAATTT
CAGCGCCGCGTGCTCGAAGTCCTGCGCGAACCGCTGGAGTTGGGCCATGTCACGATCTCCCGCGCGGGCGGACACGCCAC
GTTCCCTGCCGCGTTTCAACTCGTGGCCGCGATGAACCCGTGCCCGTGCGGCGACCTGGGACATCCGTCGCGCAATTGCC
GCTGTACGAGCGAGGCCGTGGCGCGATATCGCAATCGTCTCTCGGGCCCGCTGCTCGACCGCATCGACCTGCACGTCGAG
GTGCCGGCGCTGAGCGCCGAGATGTTCGCCGCGCCGGCCAGCGGCGAGCGCAGCGAGGTCGTGGCGACACGCGTCAGCCA
GGCGCGGGAGCGCCAGCTATCTCGCCAGGGCCAATTGAACAGTGGCCTGTCGAGCCGTGCGCTGGAGGCGCAATGCGCCC
TGCGGCCGAACGCGCAGGACGTTCTGCACCGCGCGGTGACGCAACACCATTGGTCGGCACGCACCTATCATCGCGTGCTG
CGCGTGGCGCGCACGGTAGCCGATCTCGCAGGCATTGGCGATATCGATGCCGATCACGTCGCAGAGGCCGTGCAATACCG
CGAAGCCCCGTCATCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.15

99.219

0.527
  comM Vibrio campbellii strain DS40M4

51.181

99.219

0.508
  comM Haemophilus influenzae Rd KW20

50.884

99.414

0.506
  comM Glaesserella parasuis strain SC1401

50.294

99.805

0.502
  comM Legionella pneumophila str. Paris

49.119

99.805

0.49
  comM Legionella pneumophila strain ERS1305867

49.119

99.805

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.031

99.805

0.439

Multiple sequence alignment