Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DPR03_RS01375 Genome accession   NZ_CP030754
Coordinates   287669..288388 (+) Length   239 a.a.
NCBI ID   WP_171260573.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 282669..293388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS01360 ponA 283278..285806 (-) 2529 WP_071319792.1 penicillin-binding protein PBP1a -
  DPR03_RS01365 pilM 285976..287034 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  DPR03_RS01370 comN 287034..287675 (+) 642 WP_005223471.1 PilN domain-containing protein Machinery gene
  DPR03_RS01375 comO 287669..288388 (+) 720 WP_171260573.1 type 4a pilus biogenesis protein PilO Machinery gene
  DPR03_RS01380 pilP 288388..288915 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  DPR03_RS01385 pilQ 288932..291097 (+) 2166 WP_071319794.1 type IV pilus secretin PilQ family protein Machinery gene
  DPR03_RS01390 aroK 291134..291670 (+) 537 WP_071319795.1 shikimate kinase AroK -
  DPR03_RS01395 aroB 291698..292777 (+) 1080 WP_071319796.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26944.53 Da        Isoelectric Point: 4.6463

>NTDB_id=301314 DPR03_RS01375 WP_171260573.1 287669..288388(+) (comO) [Acinetobacter schindleri strain H3]
MMSEQFDELGQEAVVVPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWVFIVFLVLMLAYFGLIRGKIESITQANAQE
QNLLNEFREKDSKLRNLQQYQQQLQDMEASFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAGLSRIVTLHDFTITGTENKEKKTDIPVVDYTLKAKTYRYVGSANSASPDTTAANGQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=301314 DPR03_RS01375 WP_171260573.1 287669..288388(+) (comO) [Acinetobacter schindleri strain H3]
ATCATGAGCGAACAATTTGATGAATTAGGTCAGGAAGCTGTTGTTGTACCAAAAAATAAAATGACGGTAGAAAAGTTTTT
TCAGCAATTTAATACCCTCGATCCAAATAACTATGGTAGCTGGCCACTGGCTGTAAAGATTACCTGCTGGGTATTTATTG
TTTTCCTGGTTTTGATGCTGGCTTATTTCGGTCTGATTCGAGGCAAGATTGAATCAATTACTCAGGCCAATGCACAAGAA
CAGAATCTGTTAAATGAATTTCGTGAGAAAGATTCCAAACTGCGTAATTTGCAACAATACCAACAGCAACTTCAGGATAT
GGAAGCAAGCTTTAACCAGCAGCTTGAACAGTTACCAAAGGAAACTGAAATCCCAGGTTTGGTTGAAGATATTAACTTGA
GTGGTGTCAATGCCGGGCTGAAGTTTAAGAATATCCGTCTTGAACCTGAAGTAAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCTATTGAAGCAACGGGTGATTATCATGCCTTTGGTTCATTTGTCAGCGGTATTGCTGGGTTGTCTCGTATTGTGAC
ACTACACGACTTTACGATTACGGGCACTGAAAATAAAGAGAAGAAAACAGATATCCCGGTTGTAGATTATACCTTGAAGG
CAAAAACCTATCGTTATGTCGGTAGTGCGAACTCAGCATCACCAGATACAACAGCTGCGAATGGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.231

97.908

0.678
  pilO Acinetobacter baumannii D1279779

68.584

94.561

0.649

Multiple sequence alignment