Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CSC60_RS09140 Genome accession   NZ_CP030323
Coordinates   1792699..1793169 (+) Length   156 a.a.
NCBI ID   WP_000610649.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_475     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1787699..1798169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC60_RS09105 (CSC60_1679) - 1788032..1788352 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  CSC60_RS09110 - 1788349..1788510 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  CSC60_RS09115 (CSC60_1680) - 1788603..1788863 (+) 261 WP_000291489.1 DUF1108 family protein -
  CSC60_RS09120 - 1788872..1789135 (+) 264 WP_001205732.1 hypothetical protein -
  CSC60_RS09125 (CSC60_1681) - 1789144..1791087 (+) 1944 WP_000700562.1 AAA family ATPase -
  CSC60_RS09130 (CSC60_1682) - 1791089..1792009 (+) 921 WP_031764964.1 recombinase RecT -
  CSC60_RS09135 (CSC60_1683) - 1792090..1792698 (+) 609 WP_078090917.1 MBL fold metallo-hydrolase -
  CSC60_RS09140 (CSC60_1684) ssbA 1792699..1793169 (+) 471 WP_000610649.1 single-stranded DNA-binding protein Machinery gene
  CSC60_RS09145 (CSC60_1685) - 1793199..1794083 (+) 885 WP_000148302.1 DnaD domain protein -
  CSC60_RS09150 (CSC60_1686) - 1794090..1794308 (+) 219 WP_000338528.1 hypothetical protein -
  CSC60_RS09155 (CSC60_1687) - 1794317..1794721 (+) 405 WP_000401963.1 RusA family crossover junction endodeoxyribonuclease -
  CSC60_RS09160 (CSC60_1688) - 1794734..1795102 (+) 369 WP_000101275.1 SA1788 family PVL leukocidin-associated protein -
  CSC60_RS09165 (CSC60_1689) - 1795106..1795348 (+) 243 WP_000131381.1 phi PVL orf 51-like protein -
  CSC60_RS09170 (CSC60_1690) - 1795363..1795614 (+) 252 WP_001065046.1 DUF1024 family protein -
  CSC60_RS14475 - 1795604..1795777 (+) 174 WP_000028424.1 hypothetical protein -
  CSC60_RS14635 (CSC60_1691) - 1795806..1795931 (+) 126 WP_258026685.1 hypothetical protein -
  CSC60_RS14480 (CSC60_1692) - 1796061..1796222 (+) 162 WP_000889682.1 hypothetical protein -
  CSC60_RS09180 (CSC60_1693) - 1796237..1796770 (+) 534 WP_001061844.1 dUTP diphosphatase -
  CSC60_RS09185 (CSC60_1694) - 1796807..1797013 (+) 207 WP_000195810.1 DUF1381 domain-containing protein -
  CSC60_RS09190 (CSC60_1695) - 1797010..1797159 (+) 150 WP_000595267.1 hypothetical protein -
  CSC60_RS09195 (CSC60_1696) - 1797318..1797968 (+) 651 WP_001005262.1 hypothetical protein -
  CSC60_RS09200 (CSC60_1697) - 1797968..1798168 (+) 201 WP_000265041.1 DUF1514 family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17716.59 Da        Isoelectric Point: 4.9816

>NTDB_id=300805 CSC60_RS09140 WP_000610649.1 1792699..1793169(+) (ssbA) [Staphylococcus aureus strain AR_475]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDNQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=300805 CSC60_RS09140 WP_000610649.1 1792699..1793169(+) (ssbA) [Staphylococcus aureus strain AR_475]
ATGATAAATAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCGGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAAATGATAATCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.583
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

33.14

100

0.365
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365

Multiple sequence alignment