Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   DN067_RS01470 Genome accession   NZ_CP030083
Coordinates   310320..311378 (+) Length   352 a.a.
NCBI ID   WP_002014066.1    Uniprot ID   N9LI98
Organism   Acinetobacter baumannii strain Aba     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305320..316378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN067_RS01455 - 306425..306757 (+) 333 WP_000169594.1 hypothetical protein -
  DN067_RS01460 - 306760..307584 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  DN067_RS01465 ponA 307602..310157 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  DN067_RS01470 pilM 310320..311378 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  DN067_RS01475 pilN 311378..312019 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  DN067_RS01480 pilO 312016..312756 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  DN067_RS01485 pilP 312767..313294 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  DN067_RS01490 pilQ 313362..315467 (+) 2106 WP_111906215.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39032.59 Da        Isoelectric Point: 4.4618

>NTDB_id=298976 DN067_RS01470 WP_002014066.1 310320..311378(+) (pilM) [Acinetobacter baumannii strain Aba]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=298976 DN067_RS01470 WP_002014066.1 310320..311378(+) (pilM) [Acinetobacter baumannii strain Aba]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCCGATCGTCTTG
CGAATCCAAATCGTGTAAATGTACTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGATTTAAATCCTAAATTGGCTGATGTCGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGCCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTCTTTGGTGGCAAGCAACTTACGCTTGAAATTCAAAGTCGTTATGGCTTGTCTTTAGAAGAA
GCAAGCCGAGCGAAAAAAGATCGCTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTAGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LI98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

100

100

1
  comM Acinetobacter nosocomialis M2

99.148

100

0.991
  comM Acinetobacter baylyi ADP1

81.534

100

0.815
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423

Multiple sequence alignment