Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   DN067_RS01480 Genome accession   NZ_CP030083
Coordinates   312016..312756 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain Aba     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307016..317756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN067_RS01465 ponA 307602..310157 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  DN067_RS01470 pilM 310320..311378 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  DN067_RS01475 pilN 311378..312019 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  DN067_RS01480 pilO 312016..312756 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  DN067_RS01485 pilP 312767..313294 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  DN067_RS01490 pilQ 313362..315467 (+) 2106 WP_111906215.1 type IV pilus secretin PilQ Machinery gene
  DN067_RS01495 - 315518..316608 (+) 1091 WP_085947913.1 IS4-like element ISAba1 family transposase -
  DN067_RS19215 - 316627..316716 (+) 90 Protein_282 hypothetical protein -
  DN067_RS01500 aroK 316728..317297 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=298978 DN067_RS01480 WP_000076101.1 312016..312756(+) (pilO) [Acinetobacter baumannii strain Aba]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=298978 DN067_RS01480 WP_000076101.1 312016..312756(+) (pilO) [Acinetobacter baumannii strain Aba]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment