Detailed information NTG0298829

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: CT138_RS06415
• Genome accession: NZ_CP030062
• Coordinates: 1309200..1310396 (+)
• Length: 398 a.a.
• NCBI ID: WP_112110822.1
• Uniprot ID: -
• Organism: Mannheimia varigena strain Teagasc
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1304200..1315396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CT138_RS06395 (CT138_06395)	-	1305470..1305703 (+)	234	WP_025247569.1	YgjV family protein	-
CT138_RS06400 (CT138_06400)	radA	1305757..1307136 (-)	1380	WP_112110819.1	DNA repair protein RadA	-
CT138_RS06405 (CT138_06405)	pilA	1307316..1307795 (+)	480	WP_112110820.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
CT138_RS06410 (CT138_06410)	pilB	1307816..1309207 (+)	1392	WP_112110821.1	GspE/PulE family protein	Machinery gene
CT138_RS06415 (CT138_06415)	pilC	1309200..1310396 (+)	1197	WP_112110822.1	type II secretion system F family protein	Machinery gene
CT138_RS06420 (CT138_06420)	-	1310607..1311056 (+)	450	WP_239493893.1	prepilin peptidase	-
CT138_RS06425 (CT138_06425)	coaE	1311088..1311723 (+)	636	WP_112110824.1	dephospho-CoA kinase	-
CT138_RS06430 (CT138_06430)	yacG	1311705..1311890 (+)	186	WP_025217069.1	DNA gyrase inhibitor YacG	-
CT138_RS06435 (CT138_06435)	holA	1311891..1312913 (-)	1023	WP_112110825.1	DNA polymerase III subunit delta	-
CT138_RS06440 (CT138_06440)	lptE	1312953..1313441 (-)	489	WP_112110826.1	LPS assembly lipoprotein LptE	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45661.23 Da
• Isoelectric Point: 9.6400

>NTDB_id=298829 CT138_RS06415 WP_112110822.1 1309200..1310396(+) (pilC) [Mannheimia varigena strain Teagasc]
MAKIYEFHWKAVDRFQQKRKGRLLSSNREELENRLLTKGYQQIRISRNFVFSQNPKREEISQFLAQLALLVNSAVPLKQA
LVMILQNCRNIKLHLWLSELIQLIESGYAFSQSLERLNKFIANQEIQLIKMGEQSGKLGLILTNLAESRLKSDKLAKKVK
KILFYPAIVLFISFSLSIGLLVFIVPQFAELYGTKEQALPLITEILFSISQCLIEQKNLLFSLFLLAVIFFLFFAKRGNW
IAKLKISVLSKLPVFRQIIEQARIVFFSQNIALMLNAHIPLDVALKSFLSEKSDDPILQKEVEFMLNLLQQGYKFSQGIN
SNVFGLDMPQMIEIGEQSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLLMGVIVGTIIVGLYLPIFDMGSLVE

Nucleotide

• Length: 1197 bp

>NTDB_id=298829 CT138_RS06415 WP_112110822.1 1309200..1310396(+) (pilC) [Mannheimia varigena strain Teagasc]
ATGGCTAAAATCTATGAGTTTCATTGGAAGGCGGTAGATCGTTTTCAACAAAAACGTAAGGGCAGATTATTATCTTCAAA
CAGAGAAGAGCTTGAAAATAGATTACTTACTAAAGGTTATCAGCAAATTCGCATTAGCCGAAACTTTGTGTTTTCACAAA
ACCCTAAAAGAGAAGAAATTAGTCAATTTCTCGCTCAGCTTGCTTTGTTGGTTAATTCTGCTGTGCCGTTAAAACAAGCC
TTAGTAATGATTTTACAAAACTGTCGAAATATTAAGCTTCATCTATGGCTAAGCGAGCTTATTCAACTCATTGAAAGTGG
TTATGCTTTTTCACAATCATTAGAACGGCTCAATAAATTTATCGCTAACCAAGAAATTCAACTAATTAAAATGGGCGAGC
AGAGCGGAAAACTCGGTTTGATTTTAACCAACTTGGCGGAGAGCAGACTTAAATCGGATAAACTGGCTAAAAAAGTCAAG
AAAATCCTGTTTTATCCAGCAATTGTACTGTTTATCTCATTCTCTCTTTCTATCGGACTTTTGGTATTCATCGTGCCACA
ATTTGCCGAACTTTACGGCACAAAAGAACAAGCCTTACCGCTGATTACTGAGATTTTATTTTCTATTTCTCAATGTTTGA
TTGAACAGAAGAATCTTTTATTCAGTTTATTTTTACTAGCGGTTATTTTTTTCTTATTTTTTGCAAAAAGAGGGAATTGG
ATAGCGAAATTGAAAATCAGCGTATTGTCTAAGCTCCCTGTTTTTAGACAAATTATAGAGCAAGCTCGCATTGTCTTTTT
TAGCCAAAATATTGCGTTGATGTTGAATGCTCATATTCCATTAGATGTCGCATTAAAATCCTTTTTATCTGAAAAAAGTG
ATGACCCTATATTACAAAAAGAAGTTGAGTTTATGCTCAATCTCTTACAACAAGGCTATAAGTTTTCGCAAGGTATCAAT
TCAAATGTGTTTGGCTTAGATATGCCTCAGATGATTGAGATAGGCGAACAGAGTGGTAATGTTGCCAAAATGTGTGAGCA
TATTAGCGAGATGTATCAACAAAAACTGGATTATCAAATTGATATTCTCTCCCAATTATTAGAGCCAATGCTGATGCTAT
TAATGGGCGTAATTGTCGGCACTATTATTGTTGGGCTGTACTTGCCTATTTTCGATATGGGCTCATTGGTGGAGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	55.86	100	0.563
pilC	Haemophilus influenzae Rd KW20	42.893	100	0.432
pilC	Haemophilus influenzae 86-028NP	41.895	100	0.422