Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CT138_RS06405 | Genome accession | NZ_CP030062 |
| Coordinates | 1307316..1307795 (+) | Length | 159 a.a. |
| NCBI ID | WP_112110820.1 | Uniprot ID | - |
| Organism | Mannheimia varigena strain Teagasc | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1302316..1312795
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CT138_RS06385 (CT138_06385) | - | 1303220..1303915 (+) | 696 | WP_025247567.1 | aspartate/glutamate racemase family protein | - |
| CT138_RS06390 (CT138_06390) | - | 1303933..1305243 (+) | 1311 | WP_112110818.1 | anaerobic C4-dicarboxylate transporter | - |
| CT138_RS06395 (CT138_06395) | - | 1305470..1305703 (+) | 234 | WP_025247569.1 | YgjV family protein | - |
| CT138_RS06400 (CT138_06400) | radA | 1305757..1307136 (-) | 1380 | WP_112110819.1 | DNA repair protein RadA | - |
| CT138_RS06405 (CT138_06405) | pilA | 1307316..1307795 (+) | 480 | WP_112110820.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CT138_RS06410 (CT138_06410) | pilB | 1307816..1309207 (+) | 1392 | WP_112110821.1 | GspE/PulE family protein | Machinery gene |
| CT138_RS06415 (CT138_06415) | pilC | 1309200..1310396 (+) | 1197 | WP_112110822.1 | type II secretion system F family protein | Machinery gene |
| CT138_RS06420 (CT138_06420) | - | 1310607..1311056 (+) | 450 | WP_239493893.1 | prepilin peptidase | - |
| CT138_RS06425 (CT138_06425) | coaE | 1311088..1311723 (+) | 636 | WP_112110824.1 | dephospho-CoA kinase | - |
| CT138_RS06430 (CT138_06430) | yacG | 1311705..1311890 (+) | 186 | WP_025217069.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17121.56 Da Isoelectric Point: 9.0783
>NTDB_id=298827 CT138_RS06405 WP_112110820.1 1307316..1307795(+) (pilA) [Mannheimia varigena strain Teagasc]
MQKIVHFRPLYTRQLRKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNGLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVSGKGTLNDYSYTLTPTFINNTISWSVNCKGSDTSLFPAGFCSATATPNG
MQKIVHFRPLYTRQLRKAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLRASASYKSDVELCIYNSNGLDNCSG
GTNGIQANKTSGNETKYLNSITVTKGVITVSGKGTLNDYSYTLTPTFINNTISWSVNCKGSDTSLFPAGFCSATATPNG
Nucleotide
Download Length: 480 bp
>NTDB_id=298827 CT138_RS06405 WP_112110820.1 1307316..1307795(+) (pilA) [Mannheimia varigena strain Teagasc]
ATGCAAAAAATTGTACATTTTAGACCGCTTTACACTCGTCAATTACGCAAGGCGTTTACCTTAATTGAGTTGATGATCGT
GATTGCAATCATTGCCATTCTTGCAACTATTGCCATTCCGTCCTACAACTCTTATACGCAAAAAGCAGCGTTATCGGAGC
TGTTGCGGGCTTCGGCTTCTTATAAATCAGATGTTGAGCTGTGTATTTATAACAGTAATGGGCTGGATAATTGCTCCGGT
GGTACAAATGGTATTCAAGCCAATAAAACGAGTGGTAATGAAACCAAATATCTTAATTCGATTACCGTAACTAAAGGAGT
GATTACTGTATCTGGTAAGGGGACACTTAATGATTACAGCTATACACTGACCCCAACTTTTATCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCGGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
ATGCAAAAAATTGTACATTTTAGACCGCTTTACACTCGTCAATTACGCAAGGCGTTTACCTTAATTGAGTTGATGATCGT
GATTGCAATCATTGCCATTCTTGCAACTATTGCCATTCCGTCCTACAACTCTTATACGCAAAAAGCAGCGTTATCGGAGC
TGTTGCGGGCTTCGGCTTCTTATAAATCAGATGTTGAGCTGTGTATTTATAACAGTAATGGGCTGGATAATTGCTCCGGT
GGTACAAATGGTATTCAAGCCAATAAAACGAGTGGTAATGAAACCAAATATCTTAATTCGATTACCGTAACTAAAGGAGT
GATTACTGTATCTGGTAAGGGGACACTTAATGATTACAGCTATACACTGACCCCAACTTTTATCAATAATACAATTAGTT
GGTCAGTAAATTGCAAAGGGAGTGATACAAGCTTATTCCCAGCGGGTTTCTGTAGTGCTACGGCTACACCAAATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
64.151 |
100 |
0.642 |
| pilA | Haemophilus influenzae 86-028NP |
58.904 |
91.824 |
0.541 |
| pilA | Haemophilus influenzae Rd KW20 |
55.944 |
89.937 |
0.503 |