Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DOM24_RS13235 Genome accession   NZ_CP030031
Coordinates   2804727..2805437 (-) Length   236 a.a.
NCBI ID   WP_111282513.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2799727..2810437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS13215 (DOM24_13215) aroB 2800313..2801398 (-) 1086 WP_111282509.1 3-dehydroquinate synthase -
  DOM24_RS14840 (DOM24_13220) aroK 2801417..2801968 (-) 552 WP_005018052.1 shikimate kinase AroK -
  DOM24_RS13225 (DOM24_13225) pilQ 2802005..2804185 (-) 2181 WP_111282511.1 type IV pilus secretin PilQ Machinery gene
  DOM24_RS13230 (DOM24_13230) pilP 2804203..2804730 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  DOM24_RS13235 (DOM24_13235) comO 2804727..2805437 (-) 711 WP_111282513.1 type 4a pilus biogenesis protein PilO Machinery gene
  DOM24_RS13240 (DOM24_13240) pilN 2805434..2806093 (-) 660 WP_111282515.1 PilN domain-containing protein Machinery gene
  DOM24_RS13245 (DOM24_13245) comM 2806093..2807151 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene
  DOM24_RS13250 (DOM24_13250) ponA 2807313..2809859 (+) 2547 WP_111282517.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26932.21 Da        Isoelectric Point: 4.4700

>NTDB_id=298589 DOM24_RS13235 WP_111282513.1 2804727..2805437(-) (comO) [Acinetobacter radioresistens strain LH6]
MSREEFDDLNQEDAKPAKRKMTLEAFLQQFNTLDTHNYGSWPFSVKLTCWVFLFLLVCAIGYFLAIRPKLEAISNAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNEQLEQLPKETEIPGLVEDINVAGVSSGLKFKNIRLESEIRQEFFIEQP
IDIQATGDYHAFGSFVSTIAALPRIVTLHDFEITSTQAQNSDIPEVNYAVKAKTYRYVGNNEQPNTTDTPAGGQPQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=298589 DOM24_RS13235 WP_111282513.1 2804727..2805437(-) (comO) [Acinetobacter radioresistens strain LH6]
ATGAGTCGTGAAGAATTTGATGATTTAAACCAGGAAGATGCTAAACCTGCTAAAAGAAAAATGACGCTAGAAGCCTTCCT
GCAACAGTTTAATACTCTGGATACACATAATTACGGCAGCTGGCCTTTTTCAGTCAAACTGACCTGCTGGGTATTTCTGT
TTCTGCTGGTTTGTGCAATTGGCTATTTTTTAGCAATTCGCCCCAAACTTGAAGCTATTTCTAATGCGCAGGCACAAGAA
CAGAATCTGTTAAACGAGTTTCGTGAAAAGGACTCTAAACTGCGTAACTTGCAGCAATACCAGGCACAACTACAAGAAAT
GGAAGCGAATTTTAATGAGCAACTGGAACAGTTGCCTAAAGAAACCGAGATTCCTGGACTGGTTGAAGATATTAACGTTG
CAGGAGTAAGTTCTGGCCTGAAATTTAAAAATATTCGTCTGGAAAGTGAAATTCGGCAGGAATTCTTTATTGAACAGCCA
ATTGATATTCAGGCAACAGGTGATTATCATGCCTTTGGTTCTTTTGTGAGCACTATTGCGGCGCTTCCACGAATTGTAAC
CCTGCATGACTTTGAAATTACCAGTACACAGGCGCAGAACTCAGATATTCCAGAAGTAAATTATGCGGTGAAAGCTAAAA
CATACCGATATGTCGGTAATAATGAGCAGCCAAATACTACGGATACCCCAGCAGGAGGGCAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.347

100

0.699
  pilO Acinetobacter baumannii D1279779

71.493

93.644

0.669

Multiple sequence alignment