Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DOM24_RS13225 Genome accession   NZ_CP030031
Coordinates   2802005..2804185 (-) Length   726 a.a.
NCBI ID   WP_111282511.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2797005..2809185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS13210 (DOM24_13210) - 2799442..2800305 (-) 864 WP_111282507.1 hypothetical protein -
  DOM24_RS13215 (DOM24_13215) aroB 2800313..2801398 (-) 1086 WP_111282509.1 3-dehydroquinate synthase -
  DOM24_RS14840 (DOM24_13220) aroK 2801417..2801968 (-) 552 WP_005018052.1 shikimate kinase AroK -
  DOM24_RS13225 (DOM24_13225) pilQ 2802005..2804185 (-) 2181 WP_111282511.1 type IV pilus secretin PilQ Machinery gene
  DOM24_RS13230 (DOM24_13230) pilP 2804203..2804730 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  DOM24_RS13235 (DOM24_13235) comO 2804727..2805437 (-) 711 WP_111282513.1 type 4a pilus biogenesis protein PilO Machinery gene
  DOM24_RS13240 (DOM24_13240) pilN 2805434..2806093 (-) 660 WP_111282515.1 PilN domain-containing protein Machinery gene
  DOM24_RS13245 (DOM24_13245) comM 2806093..2807151 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 726 a.a.        Molecular weight: 78713.34 Da        Isoelectric Point: 5.4948

>NTDB_id=298587 DOM24_RS13225 WP_111282511.1 2802005..2804185(-) (pilQ) [Acinetobacter radioresistens strain LH6]
MKKSFQEFLMGDGNSMIHLYRQFAMGAVAAAMMQVASAAVNITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLI
LDFDQAKQNLKQPSIPVATNEASAIHVASDEQRSRIIVSLKDAGAFTTRVEGNTFILKINPVTGAPTVLPQPVAVAQQPA
QGISNIGFQRGSQGEGQVLIDFLNPNTPADVQQQGSKVIVRMLGNKIPSHLIRRLNMNDFATPVSTVDAYNEGGNGIITI
QSTGSYEYMAYQTENRLTVSLKRPEEKSTVKTRSAPNYSGKKVSLDFQDIEVRRVLQLLADFTGINLVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGDVIWIAPVAELIKAEEEEAKAIAQSTRLMPLQTEYIQLNYAKAVDIEKLITQGRN
SGNGSANGASNNTEALGDSVGSLLSPRGTISIDPRTNTLIINDTAQKLDQIRRMIDLLDVAVKQVMVEARIVRASTDFTK
EMGVKWGILSQGITRNNSLLVGGSETTLWNLRDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSA
LQADGYGEVISTPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQMLLNITSDTPG
NPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSDNKRELLIFVTPRIVND
SATGNH

Nucleotide


Download         Length: 2181 bp        

>NTDB_id=298587 DOM24_RS13225 WP_111282511.1 2802005..2804185(-) (pilQ) [Acinetobacter radioresistens strain LH6]
ATGAAAAAGAGTTTTCAAGAATTTTTGATGGGGGATGGCAACAGCATGATTCATTTATATCGTCAATTTGCGATGGGAGC
AGTTGCTGCAGCAATGATGCAGGTGGCAAGTGCAGCGGTCAATATTACCAATATTGTACCTATGCAGATTCCGGGACAAG
GGACAGAAATTCGAGTCATGTTTAATGGATTGCCACCCCAGCCCCAGGCTTATCAGCTTGAACAGCCTTCGCGACTGATC
TTAGACTTTGATCAGGCCAAGCAAAATCTTAAACAGCCTAGTATTCCGGTTGCTACCAATGAAGCAAGCGCAATTCATGT
GGCCTCTGATGAACAACGTTCCCGAATTATTGTAAGTTTAAAAGATGCAGGTGCCTTTACTACCCGTGTAGAAGGCAATA
CTTTTATTTTAAAGATTAATCCGGTAACAGGCGCGCCTACAGTATTGCCTCAGCCAGTTGCTGTAGCACAGCAGCCTGCT
CAGGGTATCTCGAACATTGGTTTCCAGCGTGGAAGTCAGGGCGAGGGACAGGTTTTAATTGATTTTCTGAACCCGAATAC
TCCTGCTGATGTACAGCAGCAGGGAAGTAAAGTCATAGTCAGGATGCTGGGAAATAAAATCCCTTCCCATCTAATCCGCC
GCTTGAATATGAATGATTTTGCCACGCCGGTCTCGACTGTTGATGCCTATAATGAAGGCGGTAATGGTATTATTACTATT
CAATCAACTGGCAGTTATGAATATATGGCGTACCAGACTGAGAACCGCTTAACAGTCAGTTTAAAGCGCCCGGAAGAAAA
GAGTACGGTCAAAACCCGTTCTGCACCTAATTATAGTGGTAAAAAGGTTTCACTCGACTTTCAGGATATTGAAGTTCGTC
GGGTATTACAGTTGTTAGCAGATTTCACTGGTATCAACCTGGTTGCAGCCGACTCTGTTCAGGGAAATATTACGTTGCGC
CTGAAAGATGTACCATGGGACCAGGCTTTAGACATTATTTTAAAAACCAAAAACCTGGATAAACGTCGTAATGGTGATGT
AATCTGGATTGCTCCGGTTGCAGAGCTGATTAAAGCAGAAGAGGAAGAAGCTAAGGCGATTGCGCAAAGTACCAGACTTA
TGCCTTTACAAACTGAATATATCCAGCTGAATTATGCAAAAGCTGTCGATATCGAAAAATTGATTACCCAAGGCAGAAAT
AGTGGTAATGGTAGTGCTAACGGTGCTTCAAACAATACGGAGGCACTGGGTGATAGCGTGGGAAGCCTGCTGAGTCCAAG
AGGAACCATTTCAATAGACCCACGTACCAACACCTTAATCATTAATGATACTGCTCAGAAACTTGACCAGATCCGCCGTA
TGATTGATCTTCTGGATGTAGCTGTAAAACAGGTGATGGTTGAAGCCCGTATTGTCAGGGCTAGTACTGACTTCACCAAA
GAAATGGGCGTGAAGTGGGGAATTCTTTCACAGGGGATTACCCGTAATAACAGCCTACTAGTCGGCGGCAGTGAAACTAC
CTTATGGAATCTGCGTGATCCTGATGACGATGGTAAATACACCATAGAGCGTCCACAAAACCTGAATGTGGATTTAGGCG
TTACAGCATCGGGTGCAAGCCGTATTGCCTTCGGTTTAATTAGTCTTTCTGATTTTATGCTGGATCTCGAATTGTCAGCC
TTGCAGGCTGATGGTTATGGTGAAGTCATTTCTACGCCGAAAGTACTAACAGCTGACAAACAGCAGGCCCGAGTTGCTTC
TGGTACCCAAATTCCCTACCAGTCTTCAGAGGGCGGTGGCGCCAATGCAGTCTCTACCACTGAATTTGTGGATGCTACTT
TAAGTCTGAATGTAACACCCAGTATTACCCCTGATGGTAAAATCCAGATGTTGCTGAACATTACCAGCGATACTCCGGGG
AACCCGACACCAACCGGACAGATTGCGATTAACAAGAATGAAATTAATACTAATGTGCTGGTTAACAATGGTGAAACTGT
AGTCCTTGGCGGTATTTTTGAACAGGAAACCAGAAATACGCAAACGAAAGTACCTGTTCTGGGAGACCTGCCGGGTGTAG
GCCGTTTATTCCGCCGTGATGCTAAAAGTGATAACAAGCGTGAGTTACTGATTTTTGTTACACCACGAATTGTTAATGAC
AGTGCGACTGGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(379-464)

AMIN domain (AMIN)

(55-136)

Secretin and TonB N terminus short domain (STN)

(307-352)

Bacterial type II and III secretion system protein (Secretin)

(560-718)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.14

100

0.731
  pilQ Acinetobacter baumannii strain A118

73.003

100

0.73
  comQ Acinetobacter baylyi ADP1

73.072

98.209

0.718
  pilQ Pseudomonas aeruginosa PAK

39.918

100

0.401
  pilQ Legionella pneumophila strain Lp02

38.273

95.73

0.366
  pilQ Legionella pneumophila strain ERS1305867

38.273

95.73

0.366

Multiple sequence alignment