Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ES963_RS10960 Genome accession   NZ_CP035390
Coordinates   2061034..2062809 (-) Length   591 a.a.
NCBI ID   WP_046160493.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103641     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2056034..2067809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS10940 (ES963_10940) desE 2056407..2057465 (+) 1059 WP_021481458.1 fatty acid desaturase DesE -
  ES963_RS10945 (ES963_10945) desK 2057585..2058697 (+) 1113 WP_129093014.1 two-component sensor histidine kinase DesK -
  ES963_RS10950 (ES963_10950) desR 2058716..2059315 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  ES963_RS10955 (ES963_10955) walN 2059923..2060786 (-) 864 WP_014480017.1 3D domain-containing protein -
  ES963_RS10960 (ES963_10960) recQ 2061034..2062809 (-) 1776 WP_046160493.1 DNA helicase RecQ Machinery gene
  ES963_RS10975 (ES963_10975) azoJ 2063375..2064001 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  ES963_RS10980 (ES963_10980) stpP 2064154..2064645 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  ES963_RS10985 (ES963_10985) - 2064720..2065052 (-) 333 WP_014480020.1 hypothetical protein -
  ES963_RS10990 (ES963_10990) - 2065130..2065357 (+) 228 WP_014480021.1 hypothetical protein -
  ES963_RS10995 (ES963_10995) yocM 2065344..2065820 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  ES963_RS11000 (ES963_11000) - 2065887..2066150 (+) 264 WP_004399338.1 hypothetical protein -
  ES963_RS11005 (ES963_11005) - 2066155..2066388 (+) 234 WP_129093015.1 hypothetical protein -
  ES963_RS11010 (ES963_11010) yozO 2066482..2066826 (-) 345 WP_003220141.1 PH domain-containing protein -
  ES963_RS11015 (ES963_11015) yozC 2067183..2067386 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67355.79 Da        Isoelectric Point: 6.2902

>NTDB_id=298587 ES963_RS10960 WP_046160493.1 2061034..2062809(-) (recQ) [Bacillus subtilis strain SRCM103641]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPNACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAADQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=298587 ES963_RS10960 WP_046160493.1 2061034..2062809(-) (recQ) [Bacillus subtilis strain SRCM103641]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCAG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATTTATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTCCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTCTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGTAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGATC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(403-507)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993

Multiple sequence alignment