Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DOM24_RS13240 Genome accession   NZ_CP030031
Coordinates   2805434..2806093 (-) Length   219 a.a.
NCBI ID   WP_111282515.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2800434..2811093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS14840 (DOM24_13220) aroK 2801417..2801968 (-) 552 WP_005018052.1 shikimate kinase AroK -
  DOM24_RS13225 (DOM24_13225) pilQ 2802005..2804185 (-) 2181 WP_111282511.1 type IV pilus secretin PilQ Machinery gene
  DOM24_RS13230 (DOM24_13230) pilP 2804203..2804730 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  DOM24_RS13235 (DOM24_13235) comO 2804727..2805437 (-) 711 WP_111282513.1 type 4a pilus biogenesis protein PilO Machinery gene
  DOM24_RS13240 (DOM24_13240) pilN 2805434..2806093 (-) 660 WP_111282515.1 PilN domain-containing protein Machinery gene
  DOM24_RS13245 (DOM24_13245) comM 2806093..2807151 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene
  DOM24_RS13250 (DOM24_13250) ponA 2807313..2809859 (+) 2547 WP_111282517.1 penicillin-binding protein PBP1a -
  DOM24_RS13255 (DOM24_13255) - 2809906..2810712 (-) 807 WP_005018037.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24184.57 Da        Isoelectric Point: 4.7933

>NTDB_id=298590 DOM24_RS13240 WP_111282515.1 2805434..2806093(-) (pilN) [Acinetobacter radioresistens strain LH6]
MTTINLLPWRDELREQRKKQFIIICIGVALLGLAGVVLTWMYYDRKLDGQEQANQLIISTNQNLDIQLKSLDGLQEQRDA
IIERMNLIQGLQGKRPVTVRLVDELARVIPANMYLTKFARTGDKFTLEGKAESPNTVAELLRGLEASPWYRNAFMNSFLA
AEEKKEQNPTSLIPRPEENYGSFVVTVDAGEIAADSPPSADPNAPTNTAATGPAAGAAQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=298590 DOM24_RS13240 WP_111282515.1 2805434..2806093(-) (pilN) [Acinetobacter radioresistens strain LH6]
ATGACAACAATTAACCTGCTCCCTTGGCGTGATGAGCTAAGGGAACAACGGAAAAAGCAATTTATTATTATTTGTATTGG
GGTAGCATTACTAGGTTTAGCCGGAGTGGTACTGACCTGGATGTACTATGACCGCAAGCTGGATGGTCAGGAACAAGCTA
ATCAACTGATTATCAGTACTAACCAGAACCTGGATATACAGCTTAAATCTCTAGATGGCCTGCAAGAACAGCGTGATGCC
ATTATTGAGCGCATGAATCTGATTCAGGGCTTACAGGGTAAACGTCCGGTTACTGTACGTTTGGTGGATGAGCTGGCACG
TGTAATCCCAGCCAATATGTATCTGACCAAATTTGCACGGACTGGTGATAAATTCACTCTCGAAGGGAAGGCAGAAAGCC
CGAACACTGTAGCTGAGCTTTTGCGTGGACTAGAAGCTTCACCTTGGTATCGTAATGCCTTTATGAACTCATTCCTTGCC
GCGGAAGAAAAGAAAGAGCAGAACCCAACTTCGCTGATACCCCGACCAGAAGAAAACTATGGCAGTTTTGTTGTAACTGT
AGACGCAGGCGAGATTGCTGCTGATAGTCCACCATCGGCTGATCCCAATGCACCAACCAATACAGCAGCAACGGGTCCTG
CAGCGGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

70.909

100

0.712
  comN Acinetobacter baylyi ADP1

67.606

97.26

0.658

Multiple sequence alignment