Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ERO09_RS00760 Genome accession   NZ_CP035368
Coordinates   175717..176184 (+) Length   155 a.a.
NCBI ID   WP_005698907.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 170717..181184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS00750 (ERO09_00740) - 171143..172669 (+) 1527 WP_128786825.1 DHA2 family efflux MFS transporter permease subunit -
  ERO09_RS00755 (ERO09_00745) uvrA 172725..175556 (-) 2832 WP_128786826.1 excinuclease ABC subunit UvrA Machinery gene
  ERO09_RS00760 (ERO09_00750) ssb 175717..176184 (+) 468 WP_005698907.1 single-stranded DNA-binding protein Machinery gene
  ERO09_RS00765 (ERO09_00755) - 176661..177815 (+) 1155 WP_128786827.1 VPA1262 family N-terminal domain-containing protein -
  ERO09_RS00770 (ERO09_00760) - 177830..178231 (+) 402 WP_128786828.1 VPA1262 family N-terminal domain-containing protein -
  ERO09_RS00775 (ERO09_00765) - 178252..179607 (+) 1356 WP_128786829.1 hypothetical protein -
  ERO09_RS00780 (ERO09_00770) - 179963..180757 (+) 795 WP_128786830.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17263.17 Da        Isoelectric Point: 5.2630

>NTDB_id=298370 ERO09_RS00760 WP_005698907.1 175717..176184(+) (ssb) [Haemophilus parainfluenzae strain LC_1315_18]
MAGINKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVLYRRLAEIAGQYLRKGSQVYVEG
RLKTRKWQDNNGQDRYTTEIQGDNLQMLGGRNQEMGGYAPAQSAPQPSYQSRPAQSAPAPQAEPPMDAFDDNIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=298370 ERO09_RS00760 WP_005698907.1 175717..176184(+) (ssb) [Haemophilus parainfluenzae strain LC_1315_18]
ATGGCAGGTATTAATAAAGTAATCATCGTGGGTAATTTAGGTAATGATCCTGAAATCCGCACGATGCCAAATGGCGAGGC
CGTGGCAAATATCAGCGTGGCAACAAGTGAAAGCTGGACAGATAAAAACACGGGCGAACGCCGTGAAGTGACCGAATGGC
ACCGCATCGTGTTATATCGTCGTTTAGCGGAAATTGCGGGGCAATACTTACGCAAAGGTTCACAAGTTTATGTTGAAGGT
CGTTTAAAAACCCGCAAATGGCAAGATAACAATGGCCAAGATCGTTACACTACTGAAATCCAAGGTGATAACTTACAAAT
GTTAGGTGGTCGTAATCAAGAGATGGGCGGTTATGCACCGGCACAATCAGCACCACAACCAAGCTATCAATCTCGTCCAG
CACAATCTGCGCCAGCGCCACAAGCTGAGCCACCAATGGATGCATTTGACGATAACATTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65.556

100

0.761
  ssb Vibrio cholerae strain A1552

58.857

100

0.665
  ssb Neisseria meningitidis MC58

51.445

100

0.574
  ssb Neisseria gonorrhoeae MS11

51.445

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

32

100

0.361