Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DLM82_RS04185 Genome accession   NZ_CP029749
Coordinates   746948..747658 (+) Length   236 a.a.
NCBI ID   WP_000722052.1    Uniprot ID   X5K3L1
Organism   Streptococcus agalactiae strain PLGBS13     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 741948..752658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM82_RS04160 (DLM82_04150) - 743056..743622 (+) 567 WP_000592389.1 PepSY domain-containing protein -
  DLM82_RS04165 (DLM82_04155) - 743671..744321 (-) 651 WP_000100034.1 amino acid ABC transporter permease -
  DLM82_RS04170 (DLM82_04160) - 744333..745028 (-) 696 WP_000173640.1 amino acid ABC transporter permease -
  DLM82_RS04175 (DLM82_04165) - 745041..745841 (-) 801 WP_000946171.1 transporter substrate-binding domain-containing protein -
  DLM82_RS04180 (DLM82_04170) - 745853..746608 (-) 756 WP_000053154.1 amino acid ABC transporter ATP-binding protein -
  DLM82_RS04185 (DLM82_04175) vicR 746948..747658 (+) 711 WP_000722052.1 response regulator YycF Regulator
  DLM82_RS04190 (DLM82_04180) vicK 747651..749000 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DLM82_RS04195 (DLM82_04185) vicX 749004..749813 (+) 810 WP_001289499.1 MBL fold metallo-hydrolase Regulator
  DLM82_RS04200 (DLM82_04190) - 749816..750184 (+) 369 WP_000719384.1 YbaN family protein -
  DLM82_RS04205 (DLM82_04195) rnc 750360..751046 (+) 687 WP_000661526.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27063.90 Da        Isoelectric Point: 4.8246

>NTDB_id=295838 DLM82_RS04185 WP_000722052.1 746948..747658(+) (vicR) [Streptococcus agalactiae strain PLGBS13]
MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIE
LTHREFELLHHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=295838 DLM82_RS04185 WP_000722052.1 746948..747658(+) (vicR) [Streptococcus agalactiae strain PLGBS13]
ATGAAAAAAATACTTATCGTTGATGATGAAAAACCAATTTCAGATATTATCAAATTTAATTTAACCAAAGAAGGATATGA
GACGGCGACAGCTTTCGATGGCCGTGAAGCTTTAGTACAATATGCAGAATTTCAACCAGATTTAATCATTTTGGATTTAA
TGCTCCCTGAACTAGATGGTTTAGAAGTGGCTAAAGAAGTTCGTAAAACCAGCCATATTCCTATTATTATGCTTTCTGCA
AAAGATAGTGAGTTTGACAAAGTCATTGGTTTAGAAATCGGTGCAGATGATTATGTTACTAAACCTTTTTCAAATCGTGA
ACTTTTGGCACGGGTCAAAGCACATTTACGACGTACTGAAAATATTGAAACAGCTGTAGCAGAAGAAAGTGCTCAAAATG
CTTCTTCGGATATTACTATTGGTGAGTTGCAAATTTTACCAGACGCCTTTATTGCTAAGAAACGTGGCGAAGAAATTGAA
TTAACGCACCGAGAATTTGAATTACTTCACCATTTAGCGACACATATCGGACAAGTCATGACACGCGAACATTTATTGGA
AACAGTTTGGGGATATGATTATTTTGGAGATGTCCGTACAGTTGATGTGACGGTGAGACGTTTACGTGAAAAGATTGAAG
ATACTCCTGGTCGTCCAGAATATATTTTGACTCGACGTGGTGTAGGTTATTACATGAAGTCTTATGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5K3L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

88.983

100

0.89
  micA Streptococcus pneumoniae Cp1015

77.778

99.153

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.983

98.305

0.462
  covR Streptococcus salivarius strain HSISS4

44.635

98.729

0.441
  scnR Streptococcus mutans UA159

38.559

100

0.386

Multiple sequence alignment