Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DLM82_RS04195 Genome accession   NZ_CP029749
Coordinates   749004..749813 (+) Length   269 a.a.
NCBI ID   WP_001289499.1    Uniprot ID   A0AAD2WV74
Organism   Streptococcus agalactiae strain PLGBS13     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 744004..754813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM82_RS04170 (DLM82_04160) - 744333..745028 (-) 696 WP_000173640.1 amino acid ABC transporter permease -
  DLM82_RS04175 (DLM82_04165) - 745041..745841 (-) 801 WP_000946171.1 transporter substrate-binding domain-containing protein -
  DLM82_RS04180 (DLM82_04170) - 745853..746608 (-) 756 WP_000053154.1 amino acid ABC transporter ATP-binding protein -
  DLM82_RS04185 (DLM82_04175) vicR 746948..747658 (+) 711 WP_000722052.1 response regulator YycF Regulator
  DLM82_RS04190 (DLM82_04180) vicK 747651..749000 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DLM82_RS04195 (DLM82_04185) vicX 749004..749813 (+) 810 WP_001289499.1 MBL fold metallo-hydrolase Regulator
  DLM82_RS04200 (DLM82_04190) - 749816..750184 (+) 369 WP_000719384.1 YbaN family protein -
  DLM82_RS04205 (DLM82_04195) rnc 750360..751046 (+) 687 WP_000661526.1 ribonuclease III -
  DLM82_RS04210 (DLM82_04200) smc 751054..754593 (+) 3540 WP_000478794.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30246.18 Da        Isoelectric Point: 6.0756

>NTDB_id=295840 DLM82_RS04195 WP_001289499.1 749004..749813(+) (vicX) [Streptococcus agalactiae strain PLGBS13]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGTTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=295840 DLM82_RS04195 WP_001289499.1 749004..749813(+) (vicX) [Streptococcus agalactiae strain PLGBS13]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATCGATGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAGCCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCTAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTACAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCCCCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.208

100

0.762

Multiple sequence alignment