Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DMC40_RS09330 Genome accession   NZ_CP029694
Coordinates   1783362..1784075 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain ABC020055975     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778362..1789075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMC40_RS09320 (DMC40_09315) treC 1779432..1781060 (-) 1629 WP_011055080.1 alpha,alpha-phosphotrehalase -
  DMC40_RS09325 (DMC40_09320) treP 1781127..1783151 (-) 2025 WP_011055081.1 PTS system trehalose-specific EIIBC component -
  DMC40_RS09330 (DMC40_09325) treR 1783362..1784075 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  DMC40_RS09340 (DMC40_09335) - 1784353..1784619 (-) 267 WP_074375295.1 helix-turn-helix domain-containing protein -
  DMC40_RS09345 (DMC40_09340) - 1784877..1785734 (+) 858 Protein_1753 VOC family protein -
  DMC40_RS09350 (DMC40_09345) yaaA 1785776..1786507 (+) 732 WP_011055084.1 peroxide stress protein YaaA -
  DMC40_RS09355 (DMC40_09350) nrdG 1786681..1787295 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DMC40_RS09360 (DMC40_09355) - 1787310..1787804 (-) 495 WP_011055085.1 GNAT family N-acetyltransferase -
  DMC40_RS09365 (DMC40_09360) - 1787813..1788748 (-) 936 WP_011055086.1 Gfo/Idh/MocA family oxidoreductase -
  DMC40_RS09895 - 1788777..1788923 (-) 147 WP_011106921.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=295446 DMC40_RS09330 WP_002992823.1 1783362..1784075(+) (treR) [Streptococcus pyogenes strain ABC020055975]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=295446 DMC40_RS09330 WP_002992823.1 1783362..1784075(+) (treR) [Streptococcus pyogenes strain ABC020055975]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment