Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DMB87_RS01195 Genome accession   NZ_CP029640
Coordinates   255210..256814 (-) Length   534 a.a.
NCBI ID   WP_129561048.1    Uniprot ID   A0A6J5FT07
Organism   Paraburkholderia dokdonensis strain DCT13 isolate rhisosphere     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 250210..261814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB87_RS01180 - 252054..253415 (+) 1362 WP_129561046.1 sigma-54 dependent transcriptional regulator -
  DMB87_RS01185 - 253500..254030 (-) 531 WP_129561047.1 TlpA disulfide reductase family protein -
  DMB87_RS01190 - 254240..254800 (+) 561 WP_227875355.1 hypothetical protein -
  DMB87_RS01195 comM 255210..256814 (-) 1605 WP_129561048.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DMB87_RS01200 - 256957..257214 (-) 258 WP_129561049.1 accessory factor UbiK family protein -
  DMB87_RS01205 - 257699..258037 (+) 339 WP_129561050.1 P-II family nitrogen regulator -
  DMB87_RS01210 - 258088..259548 (+) 1461 WP_129561051.1 ammonium transporter -
  DMB87_RS01215 gshA 259917..261206 (+) 1290 WP_129561052.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 534 a.a.        Molecular weight: 56053.76 Da        Isoelectric Point: 7.2571

>NTDB_id=294435 DMB87_RS01195 WP_129561048.1 255210..256814(-) (comM) [Paraburkholderia dokdonensis strain DCT13 isolate rhisosphere]
MSLAVVRSRAPAAGRAPDVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALSNCGFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAASLTAAREFAGELSLSGAVRPMRGAFAMACGTARAHSGAPQPPDTHDAAPAHTHFEAQASCA
CTPEIYLPADNAAEAALVPGVDVYAVPDLRTLCAHLSGEEGARLAPVRASALDAAQAASPPDMVDVIGQRGARRALEVAA
AGGHHLLMVGPPGAGKSMLAARLPGLLPPMTDAEALASAALLSASSLGFSPQQWRRRPFRAPHHSSSAAALIGGRNPPQP
GEITLAHSGVLFLDELPEFDRHVLETLREPLEAGSITISRAAWQTDFPAACQLVAAMNPCPCGWRGDPSGRCRCTPEAAA
RYRRKLSGPLLDRIDIQIEIPALPPAELASRASAPGEPSAVVAARVAAARERQIARQGKTNRELSGRETDAVCRPDAAGE
ALLREAGERFGWSARAYYRALKVARTIADLADSPMPEAAHVAEAVQYRRAFSDQ

Nucleotide


Download         Length: 1605 bp        

>NTDB_id=294435 DMB87_RS01195 WP_129561048.1 255210..256814(-) (comM) [Paraburkholderia dokdonensis strain DCT13 isolate rhisosphere]
ATGTCGCTTGCCGTGGTGCGTAGCCGCGCGCCGGCTGCTGGCCGCGCGCCCGATGTGACCGTAGAAGTCCATCTCGCCAA
TGGGCTGCCGTCGTTCTCGATCGTCGGCCTGCCCGATCTCGAAGTTCGCGAAAGCCGCGAGCGCGTGCGCGCGGCGCTCT
CGAACTGCGGCTTCGATTTTCCCGTGCGCCGCATCACCGTGAATCTCGCGCCCGCCGACCTGCCAAAAGAGTCGGGCCGC
TTCGATTTGCCCATCGCGCTTGGCATTCTCGCGGCGAGCGGTCAGATTCCCGCTGCGTCGCTCACGGCCGCGCGCGAATT
CGCGGGCGAACTCTCGCTGTCGGGCGCGGTGCGTCCCATGCGCGGCGCGTTCGCGATGGCGTGTGGCACGGCGCGCGCAC
ATTCCGGCGCGCCGCAGCCGCCCGATACGCATGACGCGGCGCCCGCGCACACGCATTTCGAAGCGCAGGCCTCTTGCGCG
TGCACGCCCGAGATCTACCTGCCCGCCGACAATGCCGCCGAGGCCGCGCTCGTACCCGGTGTGGATGTCTATGCCGTTCC
CGATCTGCGCACGCTCTGCGCGCATCTCTCGGGCGAAGAAGGCGCGCGTCTTGCGCCCGTGCGAGCCAGCGCGCTCGACG
CGGCGCAGGCCGCGTCGCCGCCCGACATGGTCGACGTAATCGGCCAGCGTGGCGCGCGCCGCGCACTCGAAGTCGCGGCG
GCGGGCGGCCACCATTTGCTGATGGTCGGCCCTCCTGGCGCGGGCAAATCGATGCTCGCCGCGCGCCTGCCCGGTCTACT
GCCGCCGATGACCGACGCCGAGGCGCTCGCCAGCGCCGCGCTGCTCTCGGCGAGCTCGTTGGGTTTCTCGCCGCAACAAT
GGCGCCGGCGGCCGTTTCGCGCGCCGCACCATTCGTCCAGCGCGGCGGCGCTGATTGGCGGACGCAATCCGCCTCAGCCC
GGCGAGATCACGCTCGCCCATTCAGGTGTCCTGTTTCTCGATGAATTACCCGAGTTCGACCGTCACGTGCTGGAGACTTT
GCGCGAGCCCCTCGAAGCGGGCTCCATCACCATCTCGCGCGCGGCCTGGCAGACCGACTTTCCCGCCGCTTGCCAGCTCG
TCGCCGCCATGAATCCCTGCCCGTGCGGCTGGCGCGGCGACCCTTCGGGGCGCTGCCGCTGCACGCCCGAGGCCGCCGCG
CGCTACCGCCGCAAGCTGTCTGGGCCGCTACTCGACCGCATCGACATCCAGATCGAGATTCCCGCGCTGCCGCCAGCCGA
ACTCGCCTCGCGCGCAAGCGCGCCGGGCGAGCCGAGCGCGGTCGTGGCCGCTCGCGTGGCGGCGGCGCGCGAACGCCAGA
TCGCCCGCCAGGGCAAGACCAACCGCGAACTGAGCGGGCGCGAGACCGACGCGGTCTGTCGCCCCGATGCCGCAGGCGAA
GCGTTGCTGCGCGAGGCCGGCGAGCGCTTCGGCTGGTCAGCGCGTGCGTACTACCGCGCGCTCAAGGTAGCGCGCACGAT
CGCAGACCTCGCGGACTCGCCCATGCCCGAAGCGGCGCACGTCGCGGAAGCGGTGCAGTATCGGCGCGCATTCAGCGATC
AGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(222-426)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(436-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J5FT07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.149

99.064

0.487
  comM Vibrio campbellii strain DS40M4

48.211

99.438

0.479
  comM Haemophilus influenzae Rd KW20

46.893

99.438

0.466
  comM Legionella pneumophila strain ERS1305867

44.925

99.625

0.448
  comM Legionella pneumophila str. Paris

44.925

99.625

0.448
  comM Glaesserella parasuis strain SC1401

44.991

99.064

0.446
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.651

97.566

0.406

Multiple sequence alignment