Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AM1_RS18380 Genome accession   NC_009925
Coordinates   4105187..4105552 (-) Length   121 a.a.
NCBI ID   WP_010472888.1    Uniprot ID   B0CAH2
Organism   Acaryochloris marina MBIC11017     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4100187..4110552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM1_RS18370 (AM1_4055) - 4101937..4104459 (-) 2523 WP_012164389.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  AM1_RS18375 (AM1_4056) - 4104653..4105180 (-) 528 WP_010472886.1 chemotaxis protein CheW -
  AM1_RS18380 (AM1_4057) pilH 4105187..4105552 (-) 366 WP_010472888.1 PleD family two-component system response regulator Machinery gene
  AM1_RS18385 (AM1_4058) hmpF 4106110..4107765 (+) 1656 WP_012164390.1 pilus motility taxis protein HmpF -
  AM1_RS18390 (AM1_4059) - 4107838..4108536 (-) 699 WP_012164391.1 uracil-DNA glycosylase family protein -
  AM1_RS18395 (AM1_4060) - 4108626..4109171 (-) 546 WP_012164392.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13591.71 Da        Isoelectric Point: 4.3962

>NTDB_id=29412 AM1_RS18380 WP_010472888.1 4105187..4105552(-) (pilH) [Acaryochloris marina MBIC11017]
MQKVLVVDDSITQRQLMSNALEDMGLTVLIATDGVEALEQIQSTQPDIVVLDIVMPRKNGYEVCREIKSNPTTQNVPVVI
CSSKTEDFDRYWGMKQGADAYLTKPIQPRELLVIVRQLLEG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=29412 AM1_RS18380 WP_010472888.1 4105187..4105552(-) (pilH) [Acaryochloris marina MBIC11017]
ATGCAAAAAGTTTTAGTAGTTGATGACAGTATTACACAGCGACAACTCATGAGCAATGCTCTCGAAGACATGGGACTCAC
GGTTTTGATCGCAACAGATGGAGTAGAAGCGCTTGAGCAAATCCAATCAACGCAACCTGATATTGTGGTCCTAGATATCG
TCATGCCTCGAAAAAATGGGTATGAGGTTTGTCGCGAAATAAAGTCTAACCCAACAACTCAAAATGTACCAGTTGTAATT
TGTTCCTCAAAAACAGAAGACTTTGATCGGTACTGGGGGATGAAACAAGGGGCAGATGCTTATCTGACCAAGCCGATACA
ACCAAGAGAATTACTAGTCATAGTTAGGCAATTACTAGAAGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0CAH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

63.866

98.347

0.628
  pilG Acinetobacter baumannii strain A118

46.087

95.041

0.438
  pilL-C Synechocystis sp. PCC 6803

40.336

98.347

0.397
  micA Streptococcus pneumoniae Cp1015

39.496

98.347

0.388
  vicR Streptococcus mutans UA159

36.975

98.347

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment