Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DK842_RS11605 Genome accession   NZ_CP029495
Coordinates   2428933..2430438 (+) Length   501 a.a.
NCBI ID   WP_114061583.1    Uniprot ID   A0A344UKR1
Organism   Chromobacterium phragmitis strain IIBBL 112-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2423933..2435438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK842_RS11575 (DK842_11575) - 2424593..2425357 (+) 765 WP_114061578.1 cytochrome c1 -
  DK842_RS11580 (DK842_11580) - 2425508..2426110 (+) 603 WP_114061579.1 glutathione S-transferase N-terminal domain-containing protein -
  DK842_RS11585 (DK842_11585) - 2426120..2426551 (+) 432 WP_114061580.1 ClpXP protease specificity-enhancing factor -
  DK842_RS11590 (DK842_11590) - 2426668..2427978 (-) 1311 WP_114061581.1 ammonium transporter -
  DK842_RS11595 (DK842_11595) glnK 2428006..2428344 (-) 339 WP_021478498.1 P-II family nitrogen regulator -
  DK842_RS11600 (DK842_11600) - 2428640..2428927 (+) 288 WP_114061582.1 accessory factor UbiK family protein -
  DK842_RS11605 (DK842_11605) comM 2428933..2430438 (+) 1506 WP_114061583.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DK842_RS11610 (DK842_11610) - 2430497..2431243 (+) 747 WP_114061584.1 SPOR domain-containing protein -
  DK842_RS11615 (DK842_11615) - 2431273..2431884 (+) 612 WP_114061585.1 thiol:disulfide interchange protein DsbA/DsbL -
  DK842_RS11625 (DK842_11625) cyoA 2432817..2433758 (+) 942 WP_114061586.1 ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 52706.37 Da        Isoelectric Point: 7.7095

>NTDB_id=293302 DK842_RS11605 WP_114061583.1 2428933..2430438(+) (comM) [Chromobacterium phragmitis strain IIBBL 112-1]
MTLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEFPARKITVNLAPADLPKDSGR
FDLPIAIGILLASGQVKNDDISRYEFAGELALSGAVRPVRGALAMACQCHAAGRAFVLPVDSAAEAAVVGGAAVYAVASL
PQACAFLNGLQQLDPFAASADSALPNYPDLADVKGQSLARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPGLSER
EALESAAVQSLGSQGFQAGRWRVRPFRAPHHTASAVALVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLES
GVIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQCTPEQMARYRGKISGPLLDRIDLQVEVPALTAEELQGSAP
GEASEPVRSRVLRARERQLSRQGMLNAVLQGAELDRHCGGDGQALEVLAKALQQLGLSARAYHRILRVSRTIADLQGVET
ISRNHVLQAIQLRRAMQGSAG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=293302 DK842_RS11605 WP_114061583.1 2428933..2430438(+) (comM) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGACGCTGGCGGTGGTGGCGAGCAGGGCGTTGTCCGGGCTTGACGCCCCGGAGGTGGCCGTCGAGGTCCACCTCGCCAA
CGGCCTGCCCGCCTTCAATATCGTCGGGCTGCCCGACACCGAGGTGAAGGAAAGCCGGGATCGAGTCCGTGCCGCCATTC
TCACTTCCGGTTTCGAGTTTCCCGCCCGCAAGATCACCGTCAATCTGGCTCCGGCCGACCTGCCCAAGGATTCCGGCCGC
TTCGACCTCCCCATCGCCATCGGCATCCTGCTGGCTTCCGGCCAGGTCAAGAATGACGACATCTCCCGTTACGAATTCGC
CGGCGAGCTGGCGCTCAGCGGCGCAGTGCGCCCGGTGCGCGGCGCGCTGGCGATGGCCTGCCAGTGCCATGCCGCAGGGC
GGGCCTTCGTGCTGCCGGTGGACAGCGCGGCGGAGGCCGCGGTCGTGGGCGGCGCCGCCGTTTACGCGGTGGCCTCTTTG
CCGCAGGCCTGCGCCTTCTTGAATGGCCTGCAGCAGCTGGATCCCTTCGCGGCAAGCGCGGATTCGGCGTTGCCGAACTA
CCCTGATCTAGCCGATGTCAAAGGCCAGTCCCTCGCTCGTGGCGCGCTGGAAATCGCCGCCGCCGGCGGGCATAGCTTGC
TGTTGATGGGGCCGCCGGGAACCGGAAAGTCCATGCTGGCTGCCAGGCTGCCGGGTTTGTTGCCCGGCTTGTCGGAGCGG
GAGGCGCTGGAGAGCGCGGCGGTGCAGTCATTGGGCTCGCAGGGCTTCCAGGCGGGACGTTGGCGGGTCCGCCCCTTCAG
AGCGCCGCACCATACCGCTTCCGCGGTCGCCCTGGTCGGCGGCGGCAGCGATCCCAGGCCGGGCGAGATCAGCCTGGCGC
ACCACGGAGTGCTGTTTCTGGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTGGAAGTGCTGCGCGAACCGCTGGAAAGC
GGCGTGATCCATATCTCGCGCGCCGCCAGGCAGGCGAGTTTTCCGGCGCGCTTCCAGTTGGTGGCGGCGATGAATCCCTG
CCCCTGCGGTTATCACGGCCATCCTTCGGGGCGCTGCCAGTGCACGCCCGAGCAGATGGCGAGATATAGGGGTAAAATCT
CCGGCCCCTTGCTGGATCGGATCGACCTGCAGGTGGAGGTGCCGGCGCTGACGGCGGAAGAGCTGCAAGGCTCGGCTCCG
GGCGAGGCCAGCGAGCCGGTCCGTTCCCGGGTGTTGCGGGCGCGCGAGCGCCAGCTGTCGCGGCAAGGCATGCTGAACGC
CGTTTTGCAGGGCGCCGAGCTGGATCGGCATTGCGGCGGCGATGGGCAGGCGCTGGAGGTGCTGGCCAAGGCATTGCAAC
AACTTGGCTTGTCGGCGCGCGCGTATCATCGGATACTGCGGGTTTCGCGCACCATAGCCGATTTGCAGGGCGTGGAAACG
ATAAGCCGCAACCATGTATTGCAGGCGATCCAGCTCAGGCGCGCCATGCAAGGCAGTGCCGGATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344UKR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.141

98.802

0.535
  comM Vibrio campbellii strain DS40M4

52.929

98.802

0.523
  comM Haemophilus influenzae Rd KW20

52

99.8

0.519
  comM Legionella pneumophila strain ERS1305867

50.696

100

0.509
  comM Legionella pneumophila str. Paris

50.696

100

0.509
  comM Glaesserella parasuis strain SC1401

50.701

99.601

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.219

100

0.453

Multiple sequence alignment