Detailed information NTG0293179

Bioinformatically predicted

Overview

• Name: comB/nlmE
• Type: Regulator
• Locus tag: DK181_RS09250
• Genome accession: NZ_CP029490
• Coordinates: 1887863..1888786 (-)
• Length: 307 a.a.
• NCBI ID: WP_002961554.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain SL1
• Function: transport of ComC (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1886713..1887381	1887863..1888786	flank	482

Gene organization within MGE regions

Location: 1886713..1888786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK181_RS09245 (DK182_09245)	-	1886713..1887701 (-)	989	Protein_1755	IS30 family transposase	-
DK181_RS09250 (DK182_09250)	comB/nlmE	1887863..1888786 (-)	924	WP_002961554.1	HlyD family efflux transporter periplasmic adaptor subunit	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 35187.78 Da
• Isoelectric Point: 10.3331

>NTDB_id=293179 DK181_RS09250 WP_002961554.1 1887863..1888786(-) (comB/nlmE) [Streptococcus sobrinus strain SL1]
MNPKLLESAEFYRRRYHNFATVLIVPLVILIIFIGVFLCFAKKEITVISQGEVAPTKVLAVIQSVSDTSIAQNKLDDNTK
VDKGDLLVQYTENAEPEQKDAQKNTIKDRNDRLDKEIEKEEKKTKKKYKKLSKKERKKREKKDQKKKEKKKKDRDSEDKK
ETDHVSLFAPESGVIHTNSKYDGLNILPKWSEIAQIYPDIQKTKTVLITYYVSSDDVVSMKKGQTTRLSLEKKGNDKLTV
QGKINSVAASATTTKKGNLFKVTAKVKLSKKDSKLVKYGMTGKTVTVIDKKTYFDYFKDKLLHKVED

Nucleotide

• Length: 924 bp

>NTDB_id=293179 DK181_RS09250 WP_002961554.1 1887863..1888786(-) (comB/nlmE) [Streptococcus sobrinus strain SL1]
ATGAATCCAAAATTACTTGAAAGTGCGGAATTTTACCGTCGTCGCTACCATAATTTTGCGACTGTTCTTATTGTGCCCTT
GGTTATCTTGATTATCTTCATTGGTGTTTTCCTCTGCTTTGCCAAAAAGGAAATCACAGTGATTTCTCAAGGTGAAGTGG
CGCCAACAAAGGTATTGGCCGTTATCCAGTCTGTTAGTGACACATCGATTGCACAAAATAAATTAGACGACAACACTAAG
GTTGATAAGGGTGACCTCTTGGTGCAGTACACAGAGAATGCGGAACCAGAACAAAAGGATGCCCAAAAGAATACAATCAA
GGACCGCAATGACCGCCTAGACAAGGAAATAGAAAAGGAAGAGAAGAAAACAAAGAAAAAGTATAAAAAGCTTTCCAAAA
AGGAAAGGAAGAAACGGGAGAAAAAAGACCAGAAGAAGAAGGAGAAAAAGAAAAAAGACCGAGATTCAGAGGATAAAAAA
GAAACAGACCACGTTTCCCTCTTTGCTCCTGAGTCAGGAGTGATCCATACTAACAGTAAGTATGATGGCCTCAATATCCT
TCCTAAGTGGTCAGAAATTGCCCAAATCTATCCTGATATTCAAAAGACGAAAACCGTCTTAATTACCTACTACGTCTCAT
CTGACGATGTTGTTTCCATGAAGAAGGGCCAAACGACCCGTTTATCGCTTGAAAAGAAAGGCAATGATAAACTGACCGTC
CAAGGGAAAATCAATAGTGTCGCTGCATCGGCCACGACGACCAAGAAGGGCAACCTCTTCAAGGTCACAGCCAAGGTCAA
GCTGTCCAAGAAGGACAGCAAGCTGGTCAAGTATGGGATGACTGGAAAGACAGTCACCGTTATTGATAAGAAGACCTACT
TCGATTACTTCAAGGATAAATTGCTTCACAAGGTGGAGGATTAA

Domains

Predicted by InterproScan.

• HlyD family secretion protein (HlyD_3) (167-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB/nlmE	Streptococcus mutans UA159	68.404	100	0.684