Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DK181_RS09890 Genome accession   NZ_CP029490
Coordinates   2019912..2021276 (-) Length   454 a.a.
NCBI ID   WP_028798434.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2014912..2026276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS09870 (DK182_09870) - 2015657..2016412 (-) 756 WP_004205755.1 CPBP family intramembrane glutamic endopeptidase -
  DK181_RS09875 (DK182_09875) - 2016673..2017533 (-) 861 WP_004205757.1 DegV family protein -
  DK181_RS09880 (DK182_09880) - 2017749..2018261 (-) 513 WP_004205759.1 NYN domain-containing protein -
  DK181_RS09885 (DK182_09885) rlmB 2019178..2019915 (-) 738 WP_002961675.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DK181_RS09890 (DK182_09890) radA 2019912..2021276 (-) 1365 WP_028798434.1 DNA repair protein RadA Machinery gene
  DK181_RS09895 (DK182_09895) - 2021360..2021824 (-) 465 WP_002961681.1 cysteine hydrolase family protein -
  DK181_RS09900 (DK182_09900) - 2021833..2022279 (-) 447 WP_002961683.1 dUTP diphosphatase -
  DK181_RS09905 (DK182_09905) - 2022597..2023625 (+) 1029 WP_002961685.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DK181_RS09910 (DK182_09910) galU 2023664..2024566 (+) 903 WP_002961687.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DK181_RS09915 (DK182_09915) - 2024856..2025284 (+) 429 WP_002961690.1 hypothetical protein -
  DK181_RS09920 (DK182_09920) - 2025391..2025993 (-) 603 WP_002961692.1 AAA family ATPase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49636.97 Da        Isoelectric Point: 6.6527

>NTDB_id=293182 DK181_RS09890 WP_028798434.1 2019912..2021276(-) (radA) [Streptococcus sobrinus strain SL1]
MAKKKSTFVCQECGYNSPKYLGRCPNCGSWSSFVEEKEVEEVKNARVSLTGEKTKPTKLKDVSSIDYARTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDVDNEFYIYAETNMQNIRTEIE
RLQPDFLIIDSIQTVMSPEITSVQGSVSQVREVTAELMQLAKSNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQTGGLVEVLNPSQLFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEAPTNAQDAFIGEIGLTGEIR
RVNRIEQRLNEATKLGFTKVYAPKNALHGIVIPKNIQVIGVSTVGEVLKKVFKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=293182 DK181_RS09890 WP_028798434.1 2019912..2021276(-) (radA) [Streptococcus sobrinus strain SL1]
ATCGCTAAGAAAAAATCAACCTTTGTCTGTCAGGAATGTGGCTACAATTCGCCCAAGTATCTGGGCCGTTGTCCCAACTG
TGGTTCCTGGTCCTCCTTTGTCGAAGAAAAGGAAGTCGAAGAGGTCAAGAATGCCAGGGTTTCCTTGACAGGCGAAAAGA
CCAAGCCAACCAAGTTGAAAGATGTTTCCTCCATTGATTATGCTAGGACCAAGACGGATATGGATGAGTTCAACCGTGTC
TTGGGGGGTGGTGTCGTGCCAGGCAGTCTGGTCCTTATCGGTGGGGATCCCGGTATCGGGAAATCCACCCTACTCCTGCA
AGTCTCCACCCAGCTGGCTAATAAGGGAACGGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAGCTTCGTA
GCGAGCGACTAGGTGATGTTGACAATGAGTTCTATATCTACGCGGAGACCAATATGCAAAATATCCGCACGGAGATTGAG
CGTCTGCAACCAGATTTTCTAATTATCGATTCCATCCAGACGGTTATGAGTCCCGAAATTACTAGTGTTCAGGGCTCGGT
TTCCCAGGTCCGAGAGGTAACTGCTGAGCTCATGCAGCTGGCCAAGAGTAATAACATTGCTACCTTTATCGTCGGGCACG
TGACCAAGGAAGGGACCCTAGCTGGTCCGCGGATGTTGGAGCACATGGTGGATACAGTTCTCTATTTTGAAGGGGAACGC
CACCATACCTTTCGAATTTTGCGGGCGGTCAAAAATCGTTTCGGTTCAACCAACGAAATCGGTATTTTTGAGATGCAGAC
GGGCGGTCTGGTTGAGGTCCTCAATCCCAGCCAGCTCTTTTTAGAGGAACGTCTGGACGGGGCAACGGGATCGGCTATTG
TTGTCACCATGGAAGGAACCCGGCCCATCTTAGCCGAGGTGCAAGCCTTAGTCACACCGACTGTTTTTGGTAATGCCAAG
CGAACCACGACAGGATTGGATTTCAATCGGGTTAGCCTGATTATGGCCGTATTGGAGAAACGCTGTGGACTCCTTCTGCA
AAATCAGGATGCCTACCTCAAGTCGGCTGGTGGGGTCAAATTGGACGAGCCTGCCATCGACCTAGCTGTGGCAGTCGCCA
TCGCTTCCTCCTACAAGGAAGCACCGACCAATGCCCAAGATGCTTTCATCGGGGAAATCGGTCTGACTGGTGAAATTCGT
CGGGTCAACCGTATTGAGCAACGCCTCAATGAAGCTACCAAACTGGGCTTTACCAAGGTTTACGCTCCTAAAAATGCCTT
GCATGGCATTGTAATTCCTAAAAACATCCAAGTCATTGGCGTTTCAACCGTCGGGGAAGTATTAAAGAAAGTATTTAAGT
CATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(65-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

87.832

99.559

0.874
  radA Streptococcus pneumoniae D39

87.611

99.559

0.872
  radA Streptococcus pneumoniae R6

87.611

99.559

0.872
  radA Streptococcus pneumoniae Rx1

87.611

99.559

0.872
  radA Streptococcus pneumoniae TIGR4

87.611

99.559

0.872
  radA Streptococcus mitis SK321

87.389

99.559

0.87
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626

Multiple sequence alignment