Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK181_RS09200 Genome accession   NZ_CP029490
Coordinates   1881927..1882409 (-) Length   160 a.a.
NCBI ID   WP_002961571.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain SL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1876927..1887409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS09175 (DK182_09175) rpoZ 1878372..1878689 (-) 318 WP_002961559.1 DNA-directed RNA polymerase subunit omega -
  DK181_RS09180 (DK182_09180) gmk 1878712..1879326 (-) 615 WP_002961561.1 guanylate kinase -
  DK181_RS09185 (DK182_09185) - 1879537..1880481 (+) 945 WP_002961563.1 magnesium transporter CorA family protein -
  DK181_RS09190 (DK182_09190) - 1880511..1881200 (+) 690 WP_002961565.1 DUF1129 domain-containing protein -
  DK181_RS09195 (DK182_09195) rpsR 1881630..1881869 (-) 240 WP_002961569.1 30S ribosomal protein S18 -
  DK181_RS09200 (DK182_09200) ssb 1881927..1882409 (-) 483 WP_002961571.1 single-stranded DNA-binding protein Machinery gene
  DK181_RS09205 (DK182_09205) rpsF 1882421..1882711 (-) 291 WP_002961573.1 30S ribosomal protein S6 -
  DK181_RS09210 (DK182_09210) - 1883166..1883837 (-) 672 WP_002961575.1 TMEM175 family protein -
  DK181_RS10835 - 1884003..1884179 (-) 177 WP_169447861.1 hypothetical protein -
  DK181_RS09215 (DK182_09215) - 1884640..1884813 (-) 174 WP_080651904.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DK181_RS09220 (DK182_09220) - 1884833..1885018 (-) 186 WP_019771033.1 hypothetical protein -
  DK181_RS09225 (DK182_09225) - 1885101..1885274 (-) 174 WP_019769835.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DK181_RS09230 (DK182_09230) - 1885296..1885481 (-) 186 WP_019769836.1 hypothetical protein -
  DK181_RS09235 (DK182_09235) - 1885775..1885966 (-) 192 WP_002963416.1 bacteriocin -
  DK181_RS09240 (DK182_09240) - 1886268..1886492 (-) 225 WP_002963417.1 garvicin Q family class II bacteriocin -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17684.35 Da        Isoelectric Point: 4.9008

>NTDB_id=293178 DK181_RS09200 WP_002961571.1 1881927..1882409(-) (ssb) [Streptococcus sobrinus strain SL1]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRATREANGTGSYNAGGNSSSNFGGGQQQATPNFGRDESPFGNSNPMDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=293178 DK181_RS09200 WP_002961571.1 1881927..1882409(-) (ssb) [Streptococcus sobrinus strain SL1]
ATGATTAATAATGTCGTACTCGTGGGTCGTATGACTCGGGATGCCGAGCTTCGTTACACCCCATCCAATCAAGCTGTTGC
AACCTTCAGTTTAGCTGTTAACCGCAACTTCAAAAACCAAAATGGTGAGCGTGAGGCTGATTTCATCAACTGTGTTATCT
GGCGTCAGCAAGCCGAAAACTTGGCCAATTGGGCTAAGAAAGGGGCTTTGATTGGGATTACAGGTCGCATTCAGACGCGT
AATTATGAAAACCAACAAGGTCAACGGGTTTATGTAACCGAGGTTGTCGCTGACAATTTCCAACTTCTGGAAAGTCGTGC
CACTCGGGAAGCTAACGGTACAGGTTCCTACAATGCTGGCGGCAATAGCTCATCAAACTTTGGTGGTGGCCAACAGCAAG
CTACACCGAACTTCGGCCGTGATGAAAGTCCATTTGGTAATTCTAACCCAATGGATATTTCCGATGACGACCTTCCATTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.644
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.054

69.375

0.375
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

68.125

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

68.125

0.362

Multiple sequence alignment