Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   DKG78_RS12320 Genome accession   NZ_CP029466
Coordinates   2538310..2538618 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2533310..2543618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS12270 (DKG78_12465) sinR 2533473..2533808 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DKG78_RS12275 (DKG78_12470) tasA 2533856..2534641 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  DKG78_RS12280 (DKG78_12475) sipW 2534706..2535290 (-) 585 WP_015240205.1 signal peptidase I SipW -
  DKG78_RS12285 (DKG78_12480) tapA 2535262..2535933 (-) 672 WP_069007150.1 amyloid fiber anchoring/assembly protein TapA -
  DKG78_RS12290 (DKG78_12485) - 2536192..2536521 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  DKG78_RS12295 (DKG78_12490) - 2536562..2536741 (-) 180 WP_003153093.1 YqzE family protein -
  DKG78_RS12300 (DKG78_12495) comGG 2536798..2537175 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  DKG78_RS12305 (DKG78_12500) comGF 2537176..2537676 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  DKG78_RS12310 (DKG78_12505) comGE 2537585..2537899 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  DKG78_RS12315 (DKG78_12510) comGD 2537883..2538320 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  DKG78_RS12320 (DKG78_12515) comGC 2538310..2538618 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  DKG78_RS12325 (DKG78_12520) comGB 2538623..2539660 (-) 1038 WP_059368114.1 competence type IV pilus assembly protein ComGB Machinery gene
  DKG78_RS12330 (DKG78_12525) comGA 2539647..2540717 (-) 1071 WP_132105381.1 competence type IV pilus ATPase ComGA Machinery gene
  DKG78_RS12335 (DKG78_12530) - 2540914..2541864 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  DKG78_RS12340 (DKG78_12535) - 2542010..2543311 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=292818 DKG78_RS12320 WP_003153087.1 2538310..2538618(-) (comGC) [Bacillus amyloliquefaciens strain HM618]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=292818 DKG78_RS12320 WP_003153087.1 2538310..2538618(-) (comGC) [Bacillus amyloliquefaciens strain HM618]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAGGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CTCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAAAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment