Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DKG78_RS12270 Genome accession   NZ_CP029466
Coordinates   2533473..2533808 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2528473..2538808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS12250 (DKG78_12445) gcvT 2529079..2530179 (-) 1101 WP_132105373.1 glycine cleavage system aminomethyltransferase GcvT -
  DKG78_RS12255 (DKG78_12450) - 2530603..2532273 (+) 1671 WP_132105375.1 DEAD/DEAH box helicase -
  DKG78_RS12260 (DKG78_12455) - 2532295..2533089 (+) 795 WP_007612541.1 YqhG family protein -
  DKG78_RS12265 (DKG78_12460) sinI 2533266..2533439 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  DKG78_RS12270 (DKG78_12465) sinR 2533473..2533808 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DKG78_RS12275 (DKG78_12470) tasA 2533856..2534641 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  DKG78_RS12280 (DKG78_12475) sipW 2534706..2535290 (-) 585 WP_015240205.1 signal peptidase I SipW -
  DKG78_RS12285 (DKG78_12480) tapA 2535262..2535933 (-) 672 WP_069007150.1 amyloid fiber anchoring/assembly protein TapA -
  DKG78_RS12290 (DKG78_12485) - 2536192..2536521 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  DKG78_RS12295 (DKG78_12490) - 2536562..2536741 (-) 180 WP_003153093.1 YqzE family protein -
  DKG78_RS12300 (DKG78_12495) comGG 2536798..2537175 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  DKG78_RS12305 (DKG78_12500) comGF 2537176..2537676 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  DKG78_RS12310 (DKG78_12505) comGE 2537585..2537899 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  DKG78_RS12315 (DKG78_12510) comGD 2537883..2538320 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  DKG78_RS12320 (DKG78_12515) comGC 2538310..2538618 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=292815 DKG78_RS12270 WP_003153104.1 2533473..2533808(+) (sinR) [Bacillus amyloliquefaciens strain HM618]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=292815 DKG78_RS12270 WP_003153104.1 2533473..2533808(+) (sinR) [Bacillus amyloliquefaciens strain HM618]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment