Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   DF184_RS07240 Genome accession   NZ_CP029398
Coordinates   1448910..1449614 (-) Length   234 a.a.
NCBI ID   WP_004298854.1    Uniprot ID   A0A0K2E6P6
Organism   Streptococcus suis strain HN105     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1443910..1454614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS07225 (DF184_07225) vga(F) 1445115..1446500 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  DF184_RS07230 (DF184_07230) vicX 1446758..1447561 (-) 804 WP_024399908.1 MBL fold metallo-hydrolase Regulator
  DF184_RS07235 (DF184_07235) micB 1447568..1448917 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DF184_RS07240 (DF184_07240) micA 1448910..1449614 (-) 705 WP_004298854.1 response regulator YycF Regulator
  DF184_RS07245 (DF184_07245) - 1449808..1450569 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  DF184_RS07250 (DF184_07250) - 1450580..1451419 (+) 840 WP_105115694.1 transporter substrate-binding domain-containing protein -
  DF184_RS07255 (DF184_07255) - 1451434..1452132 (+) 699 WP_004298848.1 amino acid ABC transporter permease -
  DF184_RS07260 (DF184_07260) - 1452147..1452806 (+) 660 WP_024378367.1 amino acid ABC transporter permease -
  DF184_RS07265 (DF184_07265) - 1452852..1453244 (-) 393 WP_109371707.1 hypothetical protein -
  DF184_RS07270 (DF184_07270) - 1453290..1454346 (+) 1057 Protein_1366 IS630 family transposase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26781.77 Da        Isoelectric Point: 4.8957

>NTDB_id=292283 DF184_RS07240 WP_004298854.1 1448910..1449614(-) (micA) [Streptococcus suis strain HN105]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELT
HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGND

Nucleotide


Download         Length: 705 bp        

>NTDB_id=292283 DF184_RS07240 WP_004298854.1 1448910..1449614(-) (micA) [Streptococcus suis strain HN105]
ATGAAAAAAATATTAATTGTAGATGATGAAAAACCAATCTCAGATATTATTAAGTTTAATATGACGCGCGAGGGATATGA
AGTTGTGACAGCTTTCGATGGACGTGAAGCCTTGGAAGTCTTTGAGGCTGAGTTTCCTGACATTGTCATTTTGGACTTGA
TGCTGCCAGAATTGGACGGACTAGAAGTCGCTCGAACGATTCGTAAGACCAGCAATGTTCCAATCTTGATGTTATCTGCT
AAAGATAGCGAATTTGATAAGGTTATCGGGCTTGAAATCGGGGCGGATGATTATGTGACCAAGCCCTTCTCTAATCGTGA
ATTGCAGGCGCGTGTTAAGGCTCTTCTTCGTCGTAGTGAATTGGCAGAGACGCAGACAAATATTGAGTCAACAGGGACTC
CAGAGTTGGTGATTGGCGATTTGGTCATTCTGCCTGATGCGTTTGTCGCTAAGAAGCATGGCAAAGAGCTGGAGCTGACC
CATCGTGAGTTTGAATTGCTCCACCATCTGGCCAAACACTTAGGTCAGGTTATGACTCGAGAACATCTATTGGAAACAGT
TTGGGGTTATGATTACTTTGGTGATGTCCGCACGGTGGATGTAACGATTCGTCGTCTGCGTGAGAAAATTGAAGATACAC
CAAGCAGACCAGAATACATTCTTACTCGTCGCGGAGTGGGATATTTTATAAAAGGAAATGATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E6P6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

81.974

99.573

0.816
  vicR Streptococcus mutans UA159

80.426

100

0.808
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.783

98.291

0.44
  covR Streptococcus salivarius strain HSISS4

43.723

98.718

0.432
  scnR Streptococcus mutans UA159

38.095

98.718

0.376

Multiple sequence alignment