Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DF184_RS07230 Genome accession   NZ_CP029398
Coordinates   1446758..1447561 (-) Length   267 a.a.
NCBI ID   WP_024399908.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1441758..1452561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS07215 (DF184_07215) recR 1442349..1442945 (-) 597 WP_014637682.1 recombination mediator RecR -
  DF184_RS07220 (DF184_07220) pbp2b 1442954..1445023 (-) 2070 WP_109371705.1 penicillin-binding protein PBP2B -
  DF184_RS07225 (DF184_07225) vga(F) 1445115..1446500 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  DF184_RS07230 (DF184_07230) vicX 1446758..1447561 (-) 804 WP_024399908.1 MBL fold metallo-hydrolase Regulator
  DF184_RS07235 (DF184_07235) micB 1447568..1448917 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DF184_RS07240 (DF184_07240) micA 1448910..1449614 (-) 705 WP_004298854.1 response regulator YycF Regulator
  DF184_RS07245 (DF184_07245) - 1449808..1450569 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  DF184_RS07250 (DF184_07250) - 1450580..1451419 (+) 840 WP_105115694.1 transporter substrate-binding domain-containing protein -
  DF184_RS07255 (DF184_07255) - 1451434..1452132 (+) 699 WP_004298848.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29689.78 Da        Isoelectric Point: 5.7755

>NTDB_id=292281 DF184_RS07230 WP_024399908.1 1446758..1447561(-) (vicX) [Streptococcus suis strain HN105]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
TQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=292281 DF184_RS07230 WP_024399908.1 1446758..1447561(-) (vicX) [Streptococcus suis strain HN105]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACTTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CAAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
ACTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment