Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   DGM98_RS16350 Genome accession   NZ_CP029275
Coordinates   3754912..3755325 (-) Length   137 a.a.
NCBI ID   WP_089111877.1    Uniprot ID   -
Organism   Xanthomonas citri strain M11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3756197..3764705 3754912..3755325 flank 872


Gene organization within MGE regions


Location: 3754912..3764705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM98_RS16350 (DGM98_17095) pilA2 3754912..3755325 (-) 414 WP_089111877.1 pilin Machinery gene
  DGM98_RS16355 (DGM98_17100) comP 3755423..3755851 (-) 429 WP_007962467.1 pilin Machinery gene
  DGM98_RS16360 (DGM98_17105) pilC 3756197..3757456 (+) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  DGM98_RS16365 (DGM98_17110) - 3757463..3758326 (+) 864 WP_003491180.1 A24 family peptidase -
  DGM98_RS16370 (DGM98_17115) coaE 3758340..3758951 (+) 612 WP_099802201.1 dephospho-CoA kinase -
  DGM98_RS16375 (DGM98_17120) - 3759610..3763662 (+) 4053 WP_244242164.1 RHS repeat-associated core domain-containing protein -
  DGM98_RS16380 (DGM98_17125) - 3764308..3764520 (+) 213 WP_099802202.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14079.12 Da        Isoelectric Point: 7.6334

>NTDB_id=291556 DGM98_RS16350 WP_089111877.1 3754912..3755325(-) (pilA2) [Xanthomonas citri strain M11]
MSRVNGFTLLELMIVVAIVGILSALALPAYQSYVIKARVAEAIILADSAKAAVTQNVNNENALTTTACAGVSGLSSPTNN
VASFTCQGAGVLTVVTTSVAGSVTLSLVPSYNSDRPVVWTCRHVSGSASYVPSDCRN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=291556 DGM98_RS16350 WP_089111877.1 3754912..3755325(-) (pilA2) [Xanthomonas citri strain M11]
ATGAGCCGGGTAAACGGCTTCACCTTGCTCGAGCTAATGATCGTCGTGGCCATCGTCGGGATATTGTCTGCATTGGCCCT
GCCGGCTTATCAAAGTTATGTAATCAAGGCGCGCGTGGCCGAGGCCATTATTTTGGCTGACTCTGCAAAAGCTGCGGTGA
CGCAGAATGTCAATAATGAAAATGCTTTGACAACTACTGCATGTGCGGGGGTGAGCGGGCTTTCGTCTCCCACTAATAAT
GTAGCTTCTTTCACGTGCCAGGGCGCAGGAGTGCTGACTGTTGTTACGACCAGCGTTGCAGGCTCGGTAACTCTATCACT
TGTACCCAGCTACAACTCAGATCGTCCGGTAGTCTGGACTTGCCGACATGTTTCTGGATCGGCTAGCTACGTGCCTTCAG
ATTGCCGAAACTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

48.529

99.27

0.482
  pilA Ralstonia pseudosolanacearum GMI1000

40.625

100

0.474
  pilA2 Legionella pneumophila strain ERS1305867

47.794

99.27

0.474
  comP Acinetobacter baylyi ADP1

41.611

100

0.453
  pilA Haemophilus influenzae 86-028NP

35.714

100

0.365

Multiple sequence alignment