Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DG474_RS09410 Genome accession   NZ_CP029257
Coordinates   1968855..1969517 (-) Length   220 a.a.
NCBI ID   WP_255778201.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1963855..1974517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS09390 (DG474_09540) rplI 1964399..1964851 (-) 453 WP_000864211.1 50S ribosomal protein L9 -
  DG474_RS09395 (DG474_09545) - 1964848..1966821 (-) 1974 WP_255778200.1 DHH family phosphoesterase -
  DG474_RS09400 (DG474_09550) - 1966967..1968145 (-) 1179 WP_255778971.1 acetyl-CoA C-acetyltransferase -
  DG474_RS09405 (DG474_09555) raiA 1968227..1968775 (-) 549 WP_000599111.1 ribosome-associated translation inhibitor RaiA -
  DG474_RS09410 (DG474_09560) comFC/cflB 1968855..1969517 (-) 663 WP_255778201.1 ComF family protein Machinery gene
  DG474_RS09415 (DG474_09565) comFA/cflA 1969514..1970812 (-) 1299 WP_255778202.1 DEAD/DEAH box helicase Machinery gene
  DG474_RS09420 (DG474_09570) - 1970869..1971504 (+) 636 WP_255778203.1 YigZ family protein -
  DG474_RS09425 (DG474_09575) - 1971520..1971963 (+) 444 WP_247940441.1 PH domain-containing protein -
  DG474_RS09430 (DG474_09580) cysK 1972060..1972986 (+) 927 WP_255778204.1 cysteine synthase A -
  DG474_RS09435 (DG474_09585) tsf 1973090..1974130 (-) 1041 WP_255778205.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24889.91 Da        Isoelectric Point: 8.1532

>NTDB_id=291448 DG474_RS09410 WP_255778201.1 1968855..1969517(-) (comFC/cflB) [Streptococcus oralis strain CCUG 53468]
MNCLLCGQATKGELTFSSLFLLKHDCSYLCSACATSFENIGENYCPNCMKTGMSTKCQDCKLWCKEGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLAEELKKYRGYQFVLIPLSPERLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=291448 DG474_RS09410 WP_255778201.1 1968855..1969517(-) (comFC/cflB) [Streptococcus oralis strain CCUG 53468]
ATGAACTGTTTATTATGTGGTCAGGCTACAAAGGGGGAGTTAACTTTTAGTAGCCTCTTCCTTTTGAAGCACGACTGCAG
TTATCTATGCTCAGCTTGTGCTACGAGTTTTGAGAATATTGGTGAGAATTATTGTCCAAACTGTATGAAAACAGGCATGT
CAACTAAGTGTCAAGATTGTAAACTTTGGTGTAAAGAAGGAATTCAGGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCGATATAAGTTTGATGGCGATTTTTTGCTTAGAAAAGTTTTTGCTTCTGTTCTTGCTGA
GGAGTTGAAAAAGTATAGAGGATATCAATTTGTGTTGATTCCCCTAAGCCCTGAAAGATTGCTTGAGAGGGGGTTTAACC
AAGTCGAGGGTTTGGTTGAGGCAGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGCGCTAGTTCTTCT
AAAAGCCGTTTGGAAAGGTTGGCTACTGAGATTCCATTTTTTATTAAAGATGGTATCTCACTTCCTAAGAAGATTTTGCT
GATTGATGACATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

78.182

100

0.782
  comFC/cflB Streptococcus mitis SK321

77.273

100

0.773
  comFC/cflB Streptococcus pneumoniae D39

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae R6

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae Rx1

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae TIGR4

76.818

100

0.768
  comFC Bacillus subtilis subsp. subtilis str. 168

36.123

100

0.373

Multiple sequence alignment