Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DEH83_RS02050 Genome accession   NZ_CP029207
Coordinates   420252..420917 (-) Length   221 a.a.
NCBI ID   WP_255776936.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415252..425917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS02020 (DEH83_02000) rlmN 415412..416494 (-) 1083 WP_187328243.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DEH83_RS02025 (DEH83_02005) - 416528..417085 (-) 558 WP_003070172.1 YutD family protein -
  DEH83_RS02030 (DEH83_02010) sepM 417372..418427 (-) 1056 WP_070669255.1 SepM family pheromone-processing serine protease Regulator
  DEH83_RS02035 (DEH83_02015) coaD 418408..418905 (-) 498 WP_003070176.1 pantetheine-phosphate adenylyltransferase -
  DEH83_RS02040 (DEH83_02020) rsmD 418895..419443 (-) 549 WP_186821957.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DEH83_RS02045 (DEH83_02025) raiA 419632..420174 (-) 543 WP_003032381.1 ribosome-associated translation inhibitor RaiA -
  DEH83_RS02050 (DEH83_02030) comFC/cflB 420252..420917 (-) 666 WP_255776936.1 ComF family protein Machinery gene
  DEH83_RS02055 (DEH83_02035) comFA/cflA 420914..422215 (-) 1302 WP_255776937.1 DEAD/DEAH box helicase Machinery gene
  DEH83_RS02060 (DEH83_02040) - 422272..422907 (+) 636 WP_006269864.1 YigZ family protein -
  DEH83_RS02065 (DEH83_02045) cysK 423007..423936 (+) 930 WP_255776938.1 cysteine synthase A -
  DEH83_RS02070 (DEH83_02050) - 424179..424721 (-) 543 WP_255776939.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25497.67 Da        Isoelectric Point: 7.6705

>NTDB_id=291162 DEH83_RS02050 WP_255776936.1 420252..420917(-) (comFC/cflB) [Streptococcus constellatus strain TCV107]
MNNCLLCESLPDEKLTFCDLLTLKKPKAKACDACFEKFQRISVQHCPKCYRDGIDEICIDCDVWIKKGKEVCHKSCFMYN
EAMKDFFSQYKFQGDYALYSVFTEVLQKELKRYSDYTLVPIPVSVEKYQARGFNQVTALLEGAKLPFKEVLEKHDTIAQS
SKTREERLQSRQCFKLKDNVQLPPKILLIDDIYTTGSTLQLAKEILVEAGVKEIVTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=291162 DEH83_RS02050 WP_255776936.1 420252..420917(-) (comFC/cflB) [Streptococcus constellatus strain TCV107]
ATGAATAACTGTCTGTTATGTGAAAGTCTACCTGATGAAAAGCTAACATTTTGTGATTTGCTGACTTTGAAGAAGCCCAA
AGCAAAAGCTTGTGATGCTTGTTTTGAAAAATTCCAGCGTATTTCAGTGCAACATTGCCCTAAGTGCTATCGTGACGGAA
TAGATGAAATCTGCATAGACTGTGATGTGTGGATAAAAAAAGGAAAAGAAGTTTGCCATAAAAGCTGCTTTATGTATAAC
GAAGCTATGAAAGACTTCTTTAGTCAATACAAATTTCAAGGAGATTATGCCCTTTATTCTGTATTTACAGAAGTTTTGCA
AAAGGAATTAAAAAGATACAGCGATTATACGCTCGTGCCAATTCCTGTGAGTGTAGAAAAGTATCAAGCAAGAGGGTTTA
ATCAAGTGACAGCTCTTCTTGAGGGCGCAAAGTTGCCATTTAAGGAAGTTTTAGAAAAGCATGATACAATTGCTCAATCC
AGTAAAACAAGAGAGGAGCGATTGCAAAGCCGGCAGTGTTTTAAATTGAAAGACAACGTTCAACTTCCACCCAAAATCCT
TTTGATAGATGACATTTATACAACAGGCTCAACCCTACAATTAGCCAAGGAAATTTTAGTGGAAGCGGGAGTGAAAGAAA
TTGTGACATTTTCATTAGCCAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae TIGR4

47.706

98.643

0.471
  comFC/cflB Streptococcus pneumoniae Rx1

47.248

98.643

0.466
  comFC/cflB Streptococcus pneumoniae D39

47.248

98.643

0.466
  comFC/cflB Streptococcus pneumoniae R6

47.248

98.643

0.466
  comFC Bacillus subtilis subsp. subtilis str. 168

35.683

100

0.367

Multiple sequence alignment