Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   DEH83_RS02055 Genome accession   NZ_CP029207
Coordinates   420914..422215 (-) Length   433 a.a.
NCBI ID   WP_255776937.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415914..427215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS02025 (DEH83_02005) - 416528..417085 (-) 558 WP_003070172.1 YutD family protein -
  DEH83_RS02030 (DEH83_02010) sepM 417372..418427 (-) 1056 WP_070669255.1 SepM family pheromone-processing serine protease Regulator
  DEH83_RS02035 (DEH83_02015) coaD 418408..418905 (-) 498 WP_003070176.1 pantetheine-phosphate adenylyltransferase -
  DEH83_RS02040 (DEH83_02020) rsmD 418895..419443 (-) 549 WP_186821957.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DEH83_RS02045 (DEH83_02025) raiA 419632..420174 (-) 543 WP_003032381.1 ribosome-associated translation inhibitor RaiA -
  DEH83_RS02050 (DEH83_02030) comFC/cflB 420252..420917 (-) 666 WP_255776936.1 ComF family protein Machinery gene
  DEH83_RS02055 (DEH83_02035) comFA/cflA 420914..422215 (-) 1302 WP_255776937.1 DEAD/DEAH box helicase Machinery gene
  DEH83_RS02060 (DEH83_02040) - 422272..422907 (+) 636 WP_006269864.1 YigZ family protein -
  DEH83_RS02065 (DEH83_02045) cysK 423007..423936 (+) 930 WP_255776938.1 cysteine synthase A -
  DEH83_RS02070 (DEH83_02050) - 424179..424721 (-) 543 WP_255776939.1 hypothetical protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49438.42 Da        Isoelectric Point: 8.6009

>NTDB_id=291163 DEH83_RS02055 WP_255776937.1 420914..422215(-) (comFA/cflA) [Streptococcus constellatus strain TCV107]
MIELQDCLGRMFTKAQLPAELQLYAQTLPAMKEEKGKLCCNRCGQAVDKERHQLPIGAYYCRSCLILGRVRSDEELYYFP
QEEFPKADVLKWQGTLTEFQAKVSQRLVEAVAKRKDSLVHAVTGAGKTEMIYQVVAQVIDQGGAVCLASPRIDVCLELYR
RLKIDFACDISLLHGESEAYFRSPLVIATTHQLLKFYRAFDLLIVDEVDAFPYVDNPMLYHAVHQAVKEQGTKIFLTATS
TDELDKRVSKGELSRLSLPRRFHGNPLIVPRKVWLENFQKYLNQKKLVPKLEQFVKKQRKTGFPLLIFASEIKRGQEFAE
ILQNNFPNEKVGFVASTTENRLDVVEKFRRKEITILISTTILERGVTFPCVDVFVVEANHRLFSRSALVQIAGRVGRSME
RPTGELIFFHDGTTMAIEKAIKEIREMNQEAGL

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=291163 DEH83_RS02055 WP_255776937.1 420914..422215(-) (comFA/cflA) [Streptococcus constellatus strain TCV107]
ATGATAGAATTACAAGATTGCTTAGGTCGTATGTTTACAAAAGCACAACTACCAGCAGAATTGCAATTATATGCGCAAAC
TTTACCAGCAATGAAAGAAGAAAAAGGGAAATTATGTTGCAATCGCTGTGGGCAAGCAGTTGATAAAGAAAGACACCAAC
TGCCAATAGGTGCTTACTACTGTAGATCCTGCTTGATCTTAGGAAGGGTCAGAAGTGATGAAGAACTCTATTATTTTCCA
CAGGAAGAGTTTCCTAAAGCGGATGTCTTAAAATGGCAAGGAACGTTAACAGAATTTCAAGCCAAGGTTTCTCAAAGACT
TGTGGAGGCAGTTGCCAAGCGAAAAGATAGCTTGGTCCATGCAGTCACGGGAGCTGGAAAAACAGAAATGATCTATCAGG
TGGTAGCACAAGTTATTGATCAAGGCGGGGCCGTCTGCTTGGCTAGCCCACGAATTGATGTCTGTTTAGAACTTTATCGT
AGACTGAAAATAGATTTTGCTTGTGATATTTCACTCCTGCATGGCGAATCAGAAGCGTATTTTCGCAGTCCTCTCGTGAT
TGCCACAACGCATCAGCTCCTCAAATTTTACCGAGCATTTGATCTGCTCATCGTTGACGAAGTAGATGCCTTTCCTTATG
TAGACAATCCAATGCTTTATCATGCGGTTCATCAAGCAGTCAAAGAACAAGGCACGAAAATTTTCTTGACAGCAACCTCC
ACAGATGAGCTGGACAAAAGAGTTAGCAAGGGAGAGTTGAGCCGCTTAAGTCTCCCTAGACGTTTTCATGGGAATCCTTT
AATTGTTCCTCGAAAAGTTTGGTTGGAAAATTTTCAAAAATACTTGAATCAAAAAAAGCTAGTTCCTAAGTTGGAACAAT
TTGTTAAAAAGCAAAGAAAAACAGGTTTTCCTCTTCTCATTTTTGCTTCTGAGATTAAAAGAGGACAAGAATTTGCAGAG
ATTCTCCAAAACAATTTCCCTAATGAAAAAGTTGGCTTTGTAGCCTCAACGACTGAAAATCGACTAGATGTTGTAGAGAA
ATTTCGTCGAAAAGAAATCACAATCTTAATATCAACGACGATTCTGGAACGTGGCGTGACTTTTCCTTGTGTAGATGTTT
TTGTGGTGGAGGCCAACCACCGTTTGTTTAGTCGCAGCGCTTTGGTACAAATTGCTGGTCGTGTTGGTCGTAGTATGGAG
CGACCAACAGGCGAGTTAATCTTTTTTCATGATGGTACAACTATGGCGATAGAAAAAGCTATTAAAGAAATTCGGGAGAT
GAATCAGGAGGCTGGTTTATGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(101-245)

Helicase conserved C-terminal domain (Helicase_C)

(292-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

71.596

98.383

0.704
  comFA/cflA Streptococcus pneumoniae D39

71.028

98.845

0.702
  comFA/cflA Streptococcus pneumoniae R6

71.028

98.845

0.702
  comFA/cflA Streptococcus pneumoniae Rx1

71.028

98.845

0.702
  comFA/cflA Streptococcus mitis SK321

71.127

98.383

0.7
  comFA/cflA Streptococcus pneumoniae TIGR4

70.794

98.845

0.7
  comFA Lactococcus lactis subsp. cremoris KW2

55.276

91.917

0.508
  comFA Latilactobacillus sakei subsp. sakei 23K

40.603

99.538

0.404
  comFA Bacillus subtilis subsp. subtilis str. 168

40.5

92.379

0.374

Multiple sequence alignment