Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   DEH83_RS01490 Genome accession   NZ_CP029207
Coordinates   311025..313175 (-) Length   716 a.a.
NCBI ID   WP_255776894.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context


Location: 306025..318175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS01465 (DEH83_01445) - 306425..307138 (+) 714 WP_020997680.1 CPBP family intramembrane glutamic endopeptidase -
  DEH83_RS01470 (DEH83_01450) comE/blpR 307307..308053 (+) 747 WP_255776891.1 response regulator transcription factor Regulator
  DEH83_RS01475 (DEH83_01455) - 308454..309365 (+) 912 WP_255776892.1 sensor histidine kinase -
  DEH83_RS01480 (DEH83_01460) - 309410..309559 (-) 150 WP_003025431.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  DEH83_RS01485 (DEH83_01465) - 309653..311014 (-) 1362 WP_255776893.1 bacteriocin secretion accessory protein -
  DEH83_RS01490 (DEH83_01470) comA/nlmT 311025..313175 (-) 2151 WP_255776894.1 peptide cleavage/export ABC transporter Regulator
  DEH83_RS01495 (DEH83_01480) - 313658..314032 (+) 375 WP_255776895.1 hypothetical protein -
  DEH83_RS01500 (DEH83_01485) - 314088..314693 (-) 606 WP_255776896.1 superoxide dismutase -
  DEH83_RS01505 (DEH83_01490) holA 314763..315800 (-) 1038 WP_255776897.1 DNA polymerase III subunit delta -
  DEH83_RS01510 (DEH83_01495) cvfB 315881..316735 (-) 855 WP_187328290.1 RNA-binding virulence regulatory protein CvfB -
  DEH83_RS01515 (DEH83_01500) frr 316848..317405 (-) 558 WP_003069936.1 ribosome recycling factor -
  DEH83_RS01520 (DEH83_01505) pyrH 317409..318149 (-) 741 WP_003069937.1 UMP kinase -

Sequence


Protein


Download         Length: 716 a.a.        Molecular weight: 80405.85 Da        Isoelectric Point: 9.1744

>NTDB_id=291157 DEH83_RS01490 WP_255776894.1 311025..313175(-) (comA/nlmT) [Streptococcus constellatus strain TCV107]
MNVKKTFVPQIDARDCGVAALASIAKYYGSDYSLAHLRELAKTSKEGTTALGIVQAAQEIGFETRPIQGDMSLFDMEAIP
YPFIVHVQKKAKLPHYYVIYKNTKKGLLVGDPDPSVKITKISKETFATEWTGVAIFLAPEPSYKPHKDKKNGLTSFLPLI
FKQSSLIFYIVLASLLVTLINIVSSYYLQGILDEYIPNQMKSTLGIVSIGLIITYILQQMMSFSRDYLLIILSQRLTIDV
ILSYIRHIFELPMSFFATRRTGEIISRFTDANSIIDALASTILSLFLDLFILIMVGGVLLLQNTNLFFLTLLAIPIYTVI
IFAFIKPFEKMNHDVMQSNSMVNSAIIEDINGIETIKSLTSEESRYQKIDSEFVDYLNKTFKLSKYSIMQTALKQGAQFI
LNVVILWVGASLAMSQKISIGQLITFNALLSYFTSPLESIINLQTKLQSAKVANNRLNEVYLVESEFKTKQVITEKNFLA
GDVTFHNVSYKYGFGRDTLSDINLTIKIGDKVSLVGISGSGKTTLAKMMVHFYEPYKGQIRLNGNDLKMIDKKTLRQYIN
YLPQQAYIFSGSILENLTLGTNQIFSQEEIIRACEIAEIRSDIEQMPMGYQTELSDGAGLSGGQKQRIALARALLTKSPI
LILDEATSGLDVLTEKKVIDNLMGLKDKTIIFVAHRLSISKRTNQVIVLDKGQIIETGSHAELMERQGFYHHLFNK

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=291157 DEH83_RS01490 WP_255776894.1 311025..313175(-) (comA/nlmT) [Streptococcus constellatus strain TCV107]
GTGAATGTTAAGAAAACATTTGTTCCTCAAATAGATGCAAGAGATTGCGGTGTCGCTGCGCTTGCTTCCATTGCAAAATA
CTATGGTTCAGACTACTCTCTTGCACATCTGAGAGAACTTGCTAAGACAAGTAAAGAAGGGACAACGGCTCTTGGAATTG
TTCAAGCAGCACAAGAAATAGGTTTTGAGACACGACCGATTCAAGGGGATATGTCCTTGTTTGATATGGAAGCTATTCCC
TATCCTTTTATCGTTCATGTTCAGAAAAAAGCTAAACTCCCACATTATTATGTTATCTATAAAAATACGAAAAAAGGTCT
GCTAGTTGGAGATCCTGACCCAAGTGTAAAAATAACTAAGATATCAAAAGAGACATTTGCAACAGAATGGACTGGTGTTG
CTATTTTTTTAGCACCAGAACCTAGCTATAAACCACATAAGGATAAGAAGAATGGGCTTACTAGCTTTTTACCACTCATC
TTTAAACAGAGCTCTTTGATTTTTTATATTGTCTTAGCTAGTTTGCTTGTGACCCTCATCAACATTGTTAGTTCTTATTA
TCTGCAAGGGATTTTGGATGAATACATTCCAAATCAGATGAAATCAACTCTTGGAATCGTTTCAATTGGGCTTATCATTA
CTTACATCTTGCAGCAAATGATGAGTTTTTCCAGAGATTACTTATTGATTATACTTAGTCAGCGACTAACCATCGATGTA
ATTTTATCATATATTCGACACATTTTTGAATTACCGATGTCTTTTTTTGCTACGAGACGCACTGGAGAGATTATTTCTCG
TTTTACAGATGCTAATTCCATTATTGATGCTCTCGCTTCTACAATACTTTCACTCTTTCTTGACCTTTTTATTTTGATAA
TGGTAGGAGGGGTACTATTATTACAGAATACTAACCTTTTCTTCCTCACTCTGCTTGCTATTCCTATCTATACAGTGATT
ATTTTTGCTTTTATAAAGCCTTTTGAAAAAATGAATCATGACGTCATGCAAAGTAATTCCATGGTAAATTCTGCTATTAT
CGAAGATATTAATGGCATTGAAACGATTAAATCTTTAACCAGCGAAGAAAGTCGTTACCAAAAGATTGATAGTGAGTTTG
TCGATTATCTGAATAAGACTTTCAAGCTAAGTAAATATTCCATTATGCAGACAGCTCTCAAACAAGGAGCACAATTTATT
TTGAATGTTGTTATTCTATGGGTTGGAGCCTCTCTGGCTATGTCTCAAAAAATTTCGATTGGACAGCTGATTACTTTTAA
TGCACTCCTTTCGTATTTTACAAGTCCACTTGAAAGTATCATCAATCTGCAAACCAAGCTGCAATCGGCTAAGGTTGCCA
ACAATCGGTTGAATGAAGTCTATCTGGTAGAATCCGAATTCAAAACCAAACAAGTCATTACAGAGAAAAATTTCTTGGCT
GGTGATGTTACGTTCCATAATGTTTCCTATAAATACGGTTTCGGACGAGATACGTTATCGGATATTAACTTAACAATAAA
AATAGGAGATAAGGTGAGCTTAGTCGGTATCAGTGGTTCGGGAAAGACAACGCTTGCCAAAATGATGGTTCATTTTTATG
AGCCTTATAAAGGGCAAATCCGTCTCAATGGAAATGATCTTAAAATGATTGATAAGAAGACGCTTCGTCAATATATCAAT
TATTTACCACAACAAGCCTATATTTTTAGTGGTTCTATCTTAGAAAACCTTACATTAGGGACGAATCAAATATTTTCTCA
AGAAGAGATTATTCGCGCTTGTGAAATTGCAGAAATTCGTTCGGATATTGAACAAATGCCTATGGGATATCAAACAGAAT
TGTCCGATGGAGCTGGTCTATCAGGTGGACAAAAGCAAAGAATTGCTCTAGCACGCGCCCTCTTAACAAAGTCACCAATT
CTTATTCTTGATGAGGCAACGAGCGGATTGGATGTTCTAACTGAGAAAAAGGTCATTGACAATCTGATGGGCTTAAAAGA
CAAAACGATTATTTTTGTTGCTCATCGTCTCAGCATTTCAAAGCGGACAAATCAAGTGATTGTTCTTGATAAAGGGCAGA
TTATTGAAACTGGATCCCACGCTGAATTGATGGAAAGACAAGGCTTTTATCATCATTTATTTAATAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.073

99.022

0.714

  comA Streptococcus mitis NCTC 12261

66.339

99.581

0.661

  comA Streptococcus mitis SK321

66.199

99.581

0.659

  comA Streptococcus pneumoniae D39

65.638

99.581

0.654

  comA Streptococcus pneumoniae Rx1

65.638

99.581

0.654

  comA Streptococcus pneumoniae R6

65.638

99.581

0.654

  comA Streptococcus gordonii str. Challis substr. CH1

65.498

99.581

0.652

  comA Streptococcus pneumoniae TIGR4

65.217

99.581

0.649


Multiple sequence alignment