Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EKH72_RS16340 Genome accession   NZ_CP034565
Coordinates   3180154..3181677 (-) Length   507 a.a.
NCBI ID   WP_129830478.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain D3112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3175154..3186677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKH72_RS16320 - 3176435..3177421 (+) 987 WP_129830538.1 serine/threonine protein kinase -
  EKH72_RS16325 - 3177456..3178058 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  EKH72_RS16330 - 3178100..3178978 (-) 879 WP_020904428.1 acyltransferase -
  EKH72_RS16335 - 3179141..3180097 (+) 957 WP_024703793.1 DUF2860 domain-containing protein -
  EKH72_RS16340 comM 3180154..3181677 (-) 1524 WP_129830478.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EKH72_RS16345 ilvG 3182142..3183788 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  EKH72_RS16350 ilvM 3183799..3184083 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  EKH72_RS16355 ilvE 3184096..3185034 (+) 939 WP_015297538.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55016.10 Da        Isoelectric Point: 8.4861

>NTDB_id=290075 EKH72_RS16340 WP_129830478.1 3180154..3181677(-) (comM) [Vibrio parahaemolyticus strain D3112]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERPHLAEALGYRAMDRLLKQLTVQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=290075 EKH72_RS16340 WP_129830478.1 3180154..3181677(-) (comM) [Vibrio parahaemolyticus strain D3112]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCTAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGGTTAAGACCTGTCAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGTGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGCCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGAAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAATC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GACGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTTTTGGACTCGTTACGAGAACCATTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGATCGA
GGTGAACCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTGCTTGGCAGCCGTGAGATTGAGGCATTTTGTCCGTTGCAAAAAAGCGATGCGGAGTTTCTCGAAACTGCACTCCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTAGCCCGTACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAGCGGCCTCATCTGGCTGAAGCTTTGGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGTTCAAGCCGT
GTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.615

100

0.846
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

65.217

99.803

0.651
  comM Acinetobacter baylyi ADP1

49.499

98.422

0.487
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442

Multiple sequence alignment