Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SAHV_RS10715 Genome accession   NC_009782
Coordinates   2115444..2115914 (-) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus subsp. aureus Mu3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2110444..2120914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAHV_RS10645 (SAHV_1955) - 2110664..2111080 (-) 417 WP_000590122.1 hypothetical protein -
  SAHV_RS10650 (SAHV_1956) - 2111108..2111308 (-) 201 WP_000265043.1 DUF1514 family protein -
  SAHV_RS10655 (SAHV_1957) rinB 2111308..2111459 (-) 152 Protein_2033 transcriptional activator RinB -
  SAHV_RS10660 (SAHV_1958) - 2111456..2111662 (-) 207 WP_000195778.1 DUF1381 domain-containing protein -
  SAHV_RS10665 (SAHV_1959) - 2111679..2111852 (-) 174 WP_001209219.1 hypothetical protein -
  SAHV_RS10670 (SAHV_1960) - 2111889..2112422 (-) 534 WP_000181819.1 dUTP diphosphatase -
  SAHV_RS10675 (SAHV_1961) - 2112415..2112657 (-) 243 WP_000700108.1 hypothetical protein -
  SAHV_RS10680 (SAHV_1962) - 2112647..2112883 (-) 237 WP_001065101.1 DUF1024 family protein -
  SAHV_RS10685 (SAHV_1963) - 2112876..2113208 (-) 333 WP_072467505.1 acetyltransferase -
  SAHV_RS10690 (SAHV_1964) - 2113256..2113498 (-) 243 WP_000131382.1 SAV1978 family virulence-associated passenger protein -
  SAHV_RS10695 (SAHV_1965) - 2113502..2113870 (-) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  SAHV_RS10700 (SAHV_1966) - 2113883..2114287 (-) 405 WP_000401977.1 RusA family crossover junction endodeoxyribonuclease -
  SAHV_RS10705 (SAHV_1967) - 2114296..2114514 (-) 219 WP_000338530.1 hypothetical protein -
  SAHV_RS10710 (SAHV_1968) - 2114521..2115414 (-) 894 WP_000148333.1 DnaD domain protein -
  SAHV_RS10715 (SAHV_1969) ssbA 2115444..2115914 (-) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  SAHV_RS10720 (SAHV_1970) - 2115915..2116532 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  SAHV_RS10725 (SAHV_1971) - 2116613..2117533 (-) 921 WP_000138475.1 recombinase RecT -
  SAHV_RS10730 (SAHV_1972) - 2117535..2119478 (-) 1944 WP_000700557.1 AAA family ATPase -
  SAHV_RS15180 (SAHV_1973) - 2119487..2119750 (-) 264 WP_001205732.1 hypothetical protein -
  SAHV_RS10735 (SAHV_1974) - 2119759..2120019 (-) 261 WP_000291483.1 DUF1108 family protein -
  SAHV_RS10740 (SAHV_1975) - 2120024..2120326 (-) 303 WP_000165366.1 DUF2482 family protein -
  SAHV_RS10745 (SAHV_1976) - 2120416..2120577 (-) 162 WP_000066023.1 DUF1270 family protein -
  SAHV_RS10750 (SAHV_1977) - 2120574..2120894 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=29000 SAHV_RS10715 WP_000934760.1 2115444..2115914(-) (ssbA) [Staphylococcus aureus subsp. aureus Mu3]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=29000 SAHV_RS10715 WP_000934760.1 2115444..2115914(-) (ssbA) [Staphylococcus aureus subsp. aureus Mu3]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365

Multiple sequence alignment