Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBV39_RS19205 Genome accession   NZ_CP028901
Coordinates   4213422..4213865 (-) Length   147 a.a.
NCBI ID   WP_108622977.1    Uniprot ID   A0A2R4XP04
Organism   Orrella marina strain HZ20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4208422..4218865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV39_RS19155 (DBV39_19155) - 4208662..4209618 (-) 957 WP_108622967.1 site-specific integrase -
  DBV39_RS19160 (DBV39_19160) - 4209779..4210057 (-) 279 WP_108622968.1 hypothetical protein -
  DBV39_RS19165 (DBV39_19165) - 4210054..4210245 (-) 192 WP_108622969.1 hypothetical protein -
  DBV39_RS19170 (DBV39_19170) - 4210249..4210611 (-) 363 WP_108622970.1 hypothetical protein -
  DBV39_RS19175 (DBV39_19175) - 4210715..4211233 (-) 519 WP_108622971.1 hypothetical protein -
  DBV39_RS19180 (DBV39_19180) - 4211230..4211469 (-) 240 WP_108622972.1 hypothetical protein -
  DBV39_RS19635 - 4211466..4211633 (-) 168 WP_159079048.1 hypothetical protein -
  DBV39_RS19185 (DBV39_19185) - 4211630..4211962 (-) 333 WP_108622973.1 hypothetical protein -
  DBV39_RS19190 (DBV39_19190) - 4211959..4212249 (-) 291 WP_159079049.1 hypothetical protein -
  DBV39_RS19640 - 4212246..4212392 (-) 147 WP_159079050.1 hypothetical protein -
  DBV39_RS19195 (DBV39_19195) - 4212389..4212673 (-) 285 WP_108622975.1 hypothetical protein -
  DBV39_RS19200 (DBV39_19200) - 4212777..4213376 (+) 600 WP_159079051.1 hypothetical protein -
  DBV39_RS19205 (DBV39_19205) ssb 4213422..4213865 (-) 444 WP_108622977.1 single-stranded DNA-binding protein Machinery gene
  DBV39_RS19210 (DBV39_19210) - 4213867..4214070 (-) 204 WP_108622978.1 hypothetical protein -
  DBV39_RS19215 (DBV39_19215) - 4214267..4214491 (-) 225 WP_108622979.1 hypothetical protein -
  DBV39_RS19220 (DBV39_19220) - 4214501..4215304 (-) 804 WP_108622980.1 DUF2303 family protein -
  DBV39_RS19225 (DBV39_19225) - 4215308..4215640 (-) 333 WP_108623392.1 hypothetical protein -
  DBV39_RS19235 (DBV39_19235) - 4216515..4216724 (-) 210 WP_108622982.1 hypothetical protein -
  DBV39_RS19240 (DBV39_19240) - 4217325..4217516 (-) 192 WP_159079052.1 hypothetical protein -
  DBV39_RS19245 (DBV39_19245) - 4217759..4218622 (-) 864 WP_108622984.1 NgoMIV family type II restriction endonuclease -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16264.03 Da        Isoelectric Point: 5.3084

>NTDB_id=288377 DBV39_RS19205 WP_108622977.1 4213422..4213865(-) (ssb) [Orrella marina strain HZ20]
MASVNKVIIVGNLGRDPEVRYTSSGVAVCNLSVATTDKRTDKNTGEVREDTEWHRISLFNRLAEIAGEYLKKGSQVYIEG
RLRTRKYQDHSGDDRYITEIIGQQLQMLGSRSTAGESESPPGKARRGKPPADDAPQDPGDLDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=288377 DBV39_RS19205 WP_108622977.1 4213422..4213865(-) (ssb) [Orrella marina strain HZ20]
ATGGCATCTGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGAGATCCGGAAGTGCGCTACACGTCCTCAGGCGTGGC
TGTCTGCAATCTGTCAGTGGCCACCACTGACAAGAGAACCGACAAGAACACCGGCGAAGTCCGAGAGGACACCGAGTGGC
ACCGAATCTCACTTTTTAACCGTCTGGCTGAGATTGCTGGCGAGTATCTGAAGAAAGGCAGTCAGGTCTACATCGAAGGC
AGACTGCGCACCAGAAAGTACCAGGATCACTCGGGAGACGATCGGTACATCACCGAGATCATCGGTCAGCAGTTGCAGAT
GCTCGGATCCCGTAGCACGGCAGGCGAAAGTGAATCGCCCCCAGGTAAAGCCAGGAGAGGAAAGCCACCAGCTGACGACG
CGCCGCAGGATCCCGGCGACCTTGATGATGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4XP04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

100

0.599
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.599
  ssb Neisseria meningitidis MC58

44.253

100

0.524
  ssb Neisseria gonorrhoeae MS11

44.253

100

0.524
  ssb Latilactobacillus sakei subsp. sakei 23K

31.395

100

0.367

Multiple sequence alignment