Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   YPSIP31758_RS02090 Genome accession   NC_009708
Coordinates   172332..173855 (-) Length   507 a.a.
NCBI ID   WP_012104288.1    Uniprot ID   A0A0U1R1M4
Organism   Yersinia pseudotuberculosis IP 31758     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 167332..178855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YPSIP31758_RS02070 (YpsIP31758_0149) ytfT 168739..169758 (+) 1020 WP_002212022.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  YPSIP31758_RS02075 (YpsIP31758_0151) yjfF 169758..170750 (+) 993 WP_002212021.1 galactofuranose ABC transporter, permease protein YjfF -
  YPSIP31758_RS02080 (YpsIP31758_0150) hdfR 170737..171618 (-) 882 WP_002212020.1 HTH-type transcriptional regulator HdfR -
  YPSIP31758_RS02085 (YpsIP31758_0152) - 171737..172075 (+) 339 WP_002212019.1 DUF413 domain-containing protein -
  YPSIP31758_RS02090 (YpsIP31758_0153) comM 172332..173855 (-) 1524 WP_012104288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  YPSIP31758_RS22700 ilvL 174239..174337 (+) 99 WP_002231873.1 ilv operon leader peptide -
  YPSIP31758_RS02095 (YpsIP31758_0154) ilvG 174479..176125 (+) 1647 WP_002212017.1 acetolactate synthase 2 catalytic subunit -
  YPSIP31758_RS02100 (YpsIP31758_0155) ilvM 176122..176379 (+) 258 WP_002212016.1 acetolactate synthase 2 small subunit -
  YPSIP31758_RS02105 (YpsIP31758_0156) - 176402..177328 (+) 927 WP_002212015.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54464.96 Da        Isoelectric Point: 7.6013

>NTDB_id=28766 YPSIP31758_RS02090 WP_012104288.1 172332..173855(-) (comM) [Yersinia pseudotuberculosis IP 31758]
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALACSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENTLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQ
GESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
IQKSHLSEALSYRCMDRLLLQLHKSLM

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=28766 YPSIP31758_RS02090 WP_012104288.1 172332..173855(-) (comM) [Yersinia pseudotuberculosis IP 31758]
ATGTCACTGGCAACCATTCATACTCGCGCAACATTGGGCATTCAAGCCCCTCCTGTCGCGGTAGAAGTTCATATCAGCAA
TGGATTACCCGGATTGATATTGGTCGGCTTACCTGAAACAACGGTCAAAGAAGCACGGGATCGGGTTCGTAGCGCATTAA
TTAACAGCGGTTTTAATTTTCCCGCCAAGCGGATCACCGTCAGCCTGGCACCGGCAGATTTACCCAAAGAAGGCGGGCGC
TATGATCTCCCCATTGCTTTAGCCATCTTGGCCGCCTCAGAGCAGATCCCTGCGGATAAGTTAGCGCACTATGAGTTCTT
GGGTGAATTAGCCCTATCCGGCGCGTTAAGGCGCGTTAGCGGCGCAATTCCAGCAGCACTCGCCTGTAGCGAAGCTAACC
GTCAGTTAATCCTTCCCACCGCTAATGGTCTTGAAATTGGTCTAATCCCACAAGGCAACTCCTGGGTCGCAGACCATTTA
TTAGCGGTATGCGGTTTCTTACAAGGTGAAAACACCCTCGCACAGGGCCAGCCCTTCGAACCGGCCCCTTCACCGGATAA
CCACCTTGATTTACACGACATCATTGGCCAATCGCAGGCTAAACGTGCGTTAGAAATCGCGGCGGCAGGTGGTCATAACC
TGCTGTTACTCGGGCCACCAGGTACCGGTAAAACGATGCTGGCAACCCGCCTAACCGGGTTATTGCCTCCGCTGACCGAT
CAGGAGGCGTTAGAAGCAGCGGCGATCACCGGGTTGCTGCATAGCAACGCACTGCCAACACAATGGCGTTGCCGGGCCTT
TCGTGCCCCACACCATAGCGCATCGATGGCAGCGCTGATTGGCGGCGGCTCCATCCCCCGCCCCGGTGAGATATCACTGG
CCCATAACGGTGTGTTATTTCTCGATGAACTGCCTGAATTTGAACGCCGGGTACTGGATTCACTGCGCGAACCGTTGGAA
TCTGGCGAAATTATTATCTCCCGCGCGGCAGCCAAAATCTGTTTTCCAGCCAAAGTGCAACTTATCGCGGCGATGAACCC
TAGCCCCAGCGGCCACTACCAAGGCGTTCATAACCGCACACCGCCACAGCAAATTTTGCGCTATCTGGCCAAGTTGTCCG
GGCCATTTCTCGATAGATTCGATTTATCGATAGAAGTGCCATTACTGCCAGCCGGTATGCTGGGTGCGCAGAAAAATCAG
GGGGAGAGTAGCGCTACAGTCAAGCAGCGAGTGTTACAGGCCAGACAAAGGCAAATGGACCGGGCGGGGAAGATCAATAC
GCAGCTCACTAGCCAAGAGGTAGCAGAGTTTTGTTATTTAGCACCTGAGGATGCCGCGTTTCTCGAGCAGGTTTTACTGA
CACTCGGCCTGTCAGTACGTGCCTGGCACCATATTTTGAAAGTGGCGCGAACCATTGCCGATTTAGCGCAAGAAAAGACC
ATCCAAAAAAGTCATCTTTCAGAGGCGCTGAGCTATCGCTGTATGGATCGCCTGCTATTGCAGTTGCACAAAAGCCTGAT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U1R1M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.803

0.635
  comM Glaesserella parasuis strain SC1401

62.919

100

0.629
  comM Vibrio cholerae strain A1552

62.948

99.014

0.623
  comM Vibrio campbellii strain DS40M4

62.55

99.014

0.619
  comM Legionella pneumophila str. Paris

51.703

98.422

0.509
  comM Legionella pneumophila strain ERS1305867

51.703

98.422

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.336

100

0.448

Multiple sequence alignment