Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CDG55_RS02470 Genome accession   NZ_CP028561
Coordinates   261460..262206 (+) Length   248 a.a.
NCBI ID   WP_087535967.1    Uniprot ID   A0A2R4TH40
Organism   Acinetobacter sp. WCHA45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 256460..267206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS02455 (CDG55_02455) ponA 257067..259619 (-) 2553 WP_087535964.1 penicillin-binding protein PBP1a -
  CDG55_RS02460 (CDG55_02460) comM 259782..260840 (+) 1059 WP_087535965.1 pilus assembly protein PilM Machinery gene
  CDG55_RS02465 (CDG55_02465) pilN 260840..261463 (+) 624 WP_087535966.1 PilN domain-containing protein Machinery gene
  CDG55_RS02470 (CDG55_02470) comO 261460..262206 (+) 747 WP_087535967.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG55_RS02475 (CDG55_02475) pilP 262206..262733 (+) 528 WP_087535968.1 pilus assembly protein PilP Machinery gene
  CDG55_RS02480 (CDG55_02480) pilQ 262794..264938 (+) 2145 WP_162620847.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG55_RS02485 (CDG55_02485) aroK 264949..265515 (+) 567 WP_087535970.1 shikimate kinase AroK -
  CDG55_RS02490 (CDG55_02490) aroB 265540..266622 (+) 1083 WP_087535971.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 27966.42 Da        Isoelectric Point: 4.5270

>NTDB_id=285501 CDG55_RS02470 WP_087535967.1 261460..262206(+) (comO) [Acinetobacter sp. WCHA45]
MNLEKSDDLNQETVAIKKKKMTVEQFFQQFNTLDMNNYGSWPASVKITCWIFIFLAVLALGYFVVIRGQLDDIANAQAQE
QSLLNEFKEKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIEATGDYHAFGAFTTGIAALPRIVTLHDFTVEATEDTQKKSDIPVINYTVKAKTYRYVGADEQADANPSTSVTNSTST
PPAQGGQH

Nucleotide


Download         Length: 747 bp        

>NTDB_id=285501 CDG55_RS02470 WP_087535967.1 261460..262206(+) (comO) [Acinetobacter sp. WCHA45]
ATGAACTTAGAGAAGTCAGATGATTTAAATCAAGAGACGGTGGCGATCAAGAAAAAGAAGATGACTGTAGAGCAGTTCTT
CCAACAATTTAATACGTTGGATATGAATAACTACGGTAGCTGGCCTGCGTCTGTCAAAATAACCTGCTGGATTTTTATTT
TTCTGGCTGTGCTTGCTCTAGGGTATTTTGTCGTAATTAGAGGTCAACTTGATGATATTGCAAATGCTCAAGCACAAGAG
CAAAGTTTATTAAATGAATTTAAAGAAAAAGATTCTAAATTACGTAATTTGCAGCAATATCAAGCTCAATTACAAGAAAT
GGAAGCAAATTTCAATCAACAATTAGAACAACTACCGAAAGAAACTGAAATTCCAAGTTTAGTTGAAGATATTAATTTAA
CTGGTGTGAACTCTGGATTAAAGTTTAAAAATATCCGCTTAGAAAATGAAGTAAAGCAAGAGTTTTTTATTGAGCAGCCC
ATTAGTATTGAAGCTACGGGGGATTATCATGCTTTTGGTGCATTTACTACAGGTATTGCCGCCCTGCCACGTATTGTGAC
CCTGCATGATTTTACGGTTGAAGCAACAGAAGATACTCAGAAAAAATCTGATATTCCAGTCATTAATTATACGGTAAAAG
CAAAAACTTATCGCTATGTCGGTGCGGATGAGCAAGCAGATGCCAATCCATCTACAAGTGTAACCAATTCTACAAGTACT
CCACCTGCACAAGGGGGGCAACATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4TH40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

73.577

99.194

0.73
  pilO Acinetobacter baumannii D1279779

72.245

98.79

0.714

Multiple sequence alignment