Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CDG55_RS02465 Genome accession   NZ_CP028561
Coordinates   260840..261463 (+) Length   207 a.a.
NCBI ID   WP_087535966.1    Uniprot ID   A0A2R4THA7
Organism   Acinetobacter sp. WCHA45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255840..266463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS02450 (CDG55_02450) - 256229..257047 (+) 819 WP_087535963.1 putative RNA methyltransferase -
  CDG55_RS02455 (CDG55_02455) ponA 257067..259619 (-) 2553 WP_087535964.1 penicillin-binding protein PBP1a -
  CDG55_RS02460 (CDG55_02460) comM 259782..260840 (+) 1059 WP_087535965.1 pilus assembly protein PilM Machinery gene
  CDG55_RS02465 (CDG55_02465) pilN 260840..261463 (+) 624 WP_087535966.1 PilN domain-containing protein Machinery gene
  CDG55_RS02470 (CDG55_02470) comO 261460..262206 (+) 747 WP_087535967.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG55_RS02475 (CDG55_02475) pilP 262206..262733 (+) 528 WP_087535968.1 pilus assembly protein PilP Machinery gene
  CDG55_RS02480 (CDG55_02480) pilQ 262794..264938 (+) 2145 WP_162620847.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG55_RS02485 (CDG55_02485) aroK 264949..265515 (+) 567 WP_087535970.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23136.41 Da        Isoelectric Point: 6.0062

>NTDB_id=285500 CDG55_RS02465 WP_087535966.1 260840..261463(+) (pilN) [Acinetobacter sp. WCHA45]
MAKINLLPWRDELREQKKKQFVAFCAGVAALGVVSVFSGWMYFDHKLNDQEQANQLIVSTNQNLDTQLKSLDGLQERRNA
IIERMKLIQGLQGQRPITVRLVDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTAASLVPRVEENYGSFVVTVDLGEIGTTAEADPAASGVAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=285500 CDG55_RS02465 WP_087535966.1 260840..261463(+) (pilN) [Acinetobacter sp. WCHA45]
GTGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAAAAAGAAACAGTTCGTTGCATTTTGTGCTGG
GGTAGCAGCATTAGGCGTAGTATCAGTTTTTTCTGGGTGGATGTACTTTGACCATAAGTTGAATGATCAAGAACAGGCAA
ATCAGCTAATTGTAAGTACTAACCAGAATTTAGATACTCAACTTAAGTCATTAGATGGTTTGCAAGAACGACGTAATGCA
ATCATTGAGCGTATGAAGTTGATTCAAGGCTTACAAGGGCAGCGTCCAATTACCGTGCGTCTGGTTGATGAACTGGTACG
TGTGACACCACCAACCATGTATCTTACTAAATTTACCCGTACAGGGGATAAGTTCACCATTGAAGGAAAGGCGGAAAGTC
CAAATACAGTGGCTGAACTGTTGCGTAATCTTGAGGCATCACCTTGGTATCGCAATGCCTTTATGAATTCATTTCTGGCA
GCTGAAGAGAAAAAAGATAAAACAGCAGCATCTCTTGTGCCACGTGTTGAAGAAAACTATGGAAGCTTTGTTGTAACCGT
GGATTTAGGGGAAATAGGGACAACTGCGGAAGCTGATCCAGCAGCATCAGGAGTGGCGCAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4THA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

80.597

97.101

0.783
  comN Acinetobacter baylyi ADP1

74.762

100

0.758

Multiple sequence alignment